RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RSRC2Q7L4I2 434 aaKnown RBP21.56■■□□□ 1.04
CLN3-212ENST00000564574 EMC1Q8N766 993 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 RXFP2Q8WXD0 754 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 EDEM1Q92611 657 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 TCEAL4Q96EI5 215 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 LACRTQ9GZZ8 138 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 TASP1Q9H6P5 420 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 NAALADL1Q9UQQ1 740 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 OLFM2O95897 454 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 PDGFRAP16234 1089 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 ATP5C1P36542 298 aaKnown RBP21.55■■□□□ 1.04
CLN3-212ENST00000564574 ZNF143P52747 638 aaPredicted RBP21.55■■□□□ 1.04
CLN3-212ENST00000564574 RPL7AP62424 266 aaKnown RBP21.55■■□□□ 1.04
CLN3-212ENST00000564574 SMAD4Q13485 552 aaKnown RBP21.55■■□□□ 1.04
CLN3-212ENST00000564574 TEAD2Q15562 447 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 SUSD6Q92537 303 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 NT5C3BQ969T7 300 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 CCSER2Q9H7U1 834 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 ANAPC7Q9UJX3 599 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 PYCARDQ9ULZ3 195 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 TFR2Q9UP52 801 aa21.55■■□□□ 1.04
CLN3-212ENST00000564574 BRWD1Q9NSI6 2320 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 TRAV19A0A0A6YYK7 116 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 GJA1P17302 382 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 KCNA5P22460 613 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 GBP1P32455 592 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 ARHGAP25P42331 645 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 IFI16Q16666 785 aaKnown RBP21.54■■□□□ 1.04
CLN3-212ENST00000564574 SLC25A52Q3SY17 297 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 C10orf120Q5SQS8 335 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 GPR158Q5T848 1215 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 SYPL2Q5VXT5 272 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 TXNDC8Q6A555 127 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 TRNP1Q6NT89 227 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 DQX1Q8TE96 717 aaKnown RBP21.54■■□□□ 1.04
CLN3-212ENST00000564574 NPY6RQ99463 290 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 CNPY3Q9BT09 278 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 NACA2Q9H009 215 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 SMOC2Q9H3U7 446 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 TRPC7Q9HCX4 862 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 OSGEPQ9NPF4 335 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 IP6K2Q9UHH9 426 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 DNMT3LQ9UJW3 386 aa21.54■■□□□ 1.04
CLN3-212ENST00000564574 C2orf78A6NCI8 922 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 H3BQ06 376 aaPredicted RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 MYO1FO00160 1098 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 COCHO43405 550 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 CEBPBP17676 345 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 WEE1P30291 646 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 NOP2P46087 812 aaKnown RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 SULT1E1P49888 294 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 NNTQ13423 1086 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 PIGHQ14442 188 aaPredicted RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 ACAP1Q15027 740 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 CLUL1Q15846 466 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 CCDC14Q49A88 953 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 ARHGAP29Q52LW3 1261 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.53■■□□□ 1.04
CLN3-212ENST00000564574 RNF10Q8N5U6 811 aaKnown RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 MAFAQ8NHW3 353 aaPredicted RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 ITFG1Q8TB96 612 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 PGAP3Q96FM1 320 aaPredicted RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 SERPINB11Q96P15 392 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 NCAPGQ9BPX3 1015 aa21.53■■□□□ 1.04
CLN3-212ENST00000564574 USP15Q9Y4E8 981 aaPredicted RBP21.53■■□□□ 1.04
CLN3-212ENST00000564574 GOLGA6L9A6NEM1 432 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 NRG2O14511 850 aaPredicted RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 TRUB2O95900 331 aaKnown RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 F9P00740 461 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 HDCP19113 662 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 PSMA2P25787 234 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 KPNA1P52294 538 aaPredicted RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 SLC7A9P82251 487 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 EFEMP1Q12805 493 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 CBX2Q14781 532 aaPredicted RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 LEXMQ3ZCV2 418 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 GET4Q7L5D6 327 aaPredicted RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 STRADAQ7RTN6 431 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 NIPA2Q8N8Q9 360 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 MAB21L3Q8N8X9 362 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 CFAP57Q96MR6 1250 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 SLC46A2Q9BY10 475 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 KCND1Q9NSA2 647 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.52■■□□□ 1.04
CLN3-212ENST00000564574 GDE1Q9NZC3 331 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 MARCH2Q9P0N8 246 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 CDH22Q9UJ99 828 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 RASAL2Q9UJF2 1139 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 NUDT5Q9UKK9 219 aa21.52■■□□□ 1.04
CLN3-212ENST00000564574 ZFP37Q9Y6Q3 630 aaPredicted RBP21.52■■□□□ 1.04
CLN3-212ENST00000564574 A0A0U1RQJ8 604 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 MBTPS2O43462 519 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 ENDOD1O94919 500 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 IGLV3-25P01717 112 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 MBL2P11226 248 aaPredicted RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 AVPR1AP37288 418 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 NAP1L1P55209 391 aaKnown RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 OGDHQ02218 1023 aa21.51■■□□□ 1.03
CLN3-212ENST00000564574 PUS10Q3MIT2 529 aaKnown RBP21.51■■□□□ 1.03
CLN3-212ENST00000564574 BNIPLQ7Z465 357 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms