RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 AKIP1Q9NQ31 210 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 TMEM140Q9NV12 185 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FKBP14Q9NWM8 211 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 RGL1Q9NZL6 768 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FAM30AQ9NZY2 134 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 MTRF1LQ9UGC7 380 aaKnown RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 ATPIF1Q9UII2 106 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 HPCAL4Q9UM19 191 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 SATB2Q9UPW6 733 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 CAB39Q9Y376 341 aaPredicted RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS35-205ENST00000563984 ZNF804BA4D1E1 1349 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 CYP2D7A0A087X1C5 515 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 A0A1B0GUA9 196 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ENO4A6NNW6 628 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 FOXN1O15353 648 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 NCAM2O15394 837 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 RAMP2O60895 175 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ATP6V1G1O75348 118 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 CSPG5O95196 566 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 OLFM2O95897 454 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 HLA-DOAP06340 250 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 THEGLP0DJG4 465 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 PRLRP16471 622 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ATP5JP18859 108 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 KRT4P19013 534 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ZFP36P26651 326 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 ELF1P32519 619 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 CYP2C19P33261 490 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 WASP42768 502 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 RANBP1P43487 201 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 PSMC4P43686 418 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 MAPK9P45984 424 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 FAM189BP81408 668 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 TRAP1Q12931 704 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 TRIM71Q2Q1W2 868 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 WSCD2Q2TBF2 565 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 LRRC23Q53EV4 343 aaPredicted RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 VPS53Q5VIR6 699 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 AFMIDQ63HM1 303 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 METRNLQ641Q3 311 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ADALQ6DHV7 355 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 OTUD7BQ6GQQ9 843 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 LAIR1Q6GTX8 287 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 C8orf74Q6P047 294 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 PGM2L1Q6PCE3 622 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 Q6ZPA2 131 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 C4orf50Q6ZRC1 276 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 CENPQQ7L2Z9 268 aaPredicted RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 FASTKD5Q7L8L6 764 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 ATG9AQ7Z3C6 839 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 NANOGNBQ7Z5D8 188 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ZNF540Q8NDQ6 660 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 B4GALNT2Q8NHY0 566 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 NOC3LQ8WTT2 800 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 LZICQ8WZA0 190 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 SLC35B4Q969S0 331 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 MRI1Q9BV20 369 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 MLST8Q9BVC4 326 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 SARGQ9BW04 601 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 STK31Q9BXU1 1019 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 TEX13BQ9BXU2 312 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 TRIM4Q9C037 500 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ELAC1Q9H777 363 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 C8orf33Q9H7E9 229 aaPredicted RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 DNAJC18Q9H819 358 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 MANSC1Q9H8J5 431 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 ABCF3Q9NUQ8 709 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 PDP2Q9P2J9 529 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 NFKBIL1Q9UBC1 381 aaPredicted RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 GIMAP2Q9UG22 337 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 DDX25Q9UHL0 483 aaKnown RBP5.45□□□□□ -1.54
VPS35-205ENST00000563984 RIMKLBQ9ULI2 386 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 DNM3Q9UQ16 869 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 MRFAP1Q9Y605 127 aa5.45□□□□□ -1.54
VPS35-205ENST00000563984 CARMIL1Q5VZK9 1371 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 IQANK1A0A1B0GTG1 560 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 E2F8A0AVK6 867 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 CCDC69A6NI79 296 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 PI4K2BG5E9Z4 385 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ZNF185O15231 689 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 YKT6O15498 198 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 RTN2O75298 545 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 NCR1O76036 304 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 MT-ND3P03897 115 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 RAP2AP10114 183 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 TROVE2P10155 538 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS35-205ENST00000563984 TOP1P11387 765 aaKnown RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 ZNF3P17036 446 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 IL12RB1P42701 662 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 CHN2P52757 468 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 TUBA4AP68366 448 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 TAP1Q03518 808 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 UBXN1Q04323 297 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 AP1B1Q10567 949 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 GRSF1Q12849 480 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS35-205ENST00000563984 CUL4BQ13620 913 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 NFE2L1Q14494 772 aa5.44□□□□□ -1.54
VPS35-205ENST00000563984 ZRSR1Q15695 479 aaKnown RBP5.44□□□□□ -1.54
VPS35-205ENST00000563984 CCNG2Q16589 344 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms