RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 CBWD5Q5RIA9 395 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 ANKRD40Q6AI12 368 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 IL31Q6EBC2 164 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 GRAMD4Q6IC98 578 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 ANKRD52Q8NB46 1076 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 TATDN2Q93075 761 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 JAKMIP2Q96AA8 810 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 XPO6Q96QU8 1125 aaKnown RBP18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 TSG101Q99816 390 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 ARID3AQ99856 593 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 NAGPAQ9UK23 515 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 FBXO10Q9UK96 956 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 ZNF510Q9Y2H8 683 aa18.11■□□□□ 0.49
VPS9D1-203ENST00000563798 SPTBN2O15020 2390 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 STC2O76061 302 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 RALAP11233 206 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 TYRP14679 529 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 PMS1P54277 932 aaKnown RBP18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 BYSLQ13895 437 aaKnown RBP18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 BECN1Q14457 450 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 MAP7D1Q3KQU3 841 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 C10orf120Q5SQS8 335 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 C10orf76Q5T2E6 689 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 PM20D1Q6GTS8 502 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 PIGZQ86VD9 579 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 ARHGAP18Q8N392 663 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 ZNF513Q8N8E2 541 aaPredicted RBP18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 SLC35C1Q96A29 364 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 BBS2Q9BXC9 721 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 SMOC1Q9H4F8 434 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 CD248Q9HCU0 757 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 INVSQ9Y283 1065 aa18.1■□□□□ 0.49
VPS9D1-203ENST00000563798 GOLGA6L4A6NEF3 574 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 NEDD8-MDP1E9PL57 170 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 MDM4O15151 490 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 TRIM24O15164 1050 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 PMM2O15305 246 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 KLKB1P03952 638 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 CISD3P0C7P0 127 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 NTSR1P30989 418 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 COG7P83436 770 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 FOXR2Q6PJQ5 311 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 UBR7Q8N806 425 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 SMARCE1Q969G3 411 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 SPACA7Q96KW9 195 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 LSM14BQ9BX40 385 aaKnown RBP18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 DNAJC17Q9NVM6 304 aaKnown RBP18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 ARMCX3Q9UH62 379 aaPredicted RBP18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 NUDT5Q9UKK9 219 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 PLXND1Q9Y4D7 1925 aa18.09■□□□□ 0.49
VPS9D1-203ENST00000563798 A0A1W2PQF6 199 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 TCRBV21S2A2A0A5A6 115 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 PENKP01210 267 aaPredicted RBP18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 SLC8A3P57103 927 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 CUL2Q13617 745 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 TCEAL6Q6IPX3 200 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 TTC30AQ86WT1 665 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 MIB1Q86YT6 1006 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 TCEAL3Q969E4 200 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 DHTKD1Q96HY7 919 aaPredicted RBP18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 GABRG3Q99928 467 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 DCLK3Q9C098 648 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 METTL14Q9HCE5 456 aaKnown RBP18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 ZDHHC4Q9NPG8 344 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 MBD1Q9UIS9 605 aaPredicted RBP18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 HOOK1Q9UJC3 728 aaKnown RBP18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 KIAA1257Q9ULG3 409 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 SLC27A6Q9Y2P4 619 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 ABCA7Q8IZY2 2146 aa18.08■□□□□ 0.48
VPS9D1-203ENST00000563798 PRRT4C9JH25 899 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 GFRA2O00451 464 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 XPO1O14980 1071 aaKnown RBP18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 GABRG2P18507 467 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 CHKAP35790 457 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 PPP1R2P41236 205 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 DPP6P42658 865 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 DGKGP49619 791 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 YWHAEP62258 255 aaKnown RBP18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 DCAF17Q5H9S7 520 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 TCERG1LQ5VWI1 586 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 RNF43Q68DV7 783 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 TPGS1Q6ZTW0 290 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 LPCAT2Q7L5N7 544 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 CYP2U1Q7Z449 544 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 HMGB4Q8WW32 186 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 RLN3Q8WXF3 142 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 EDEM2Q9BV94 578 aa18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 BCCIPQ9P287 314 aaKnown RBP eCLIP18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 EVLQ9UI08 416 aaPredicted RBP18.07■□□□□ 0.48
VPS9D1-203ENST00000563798 LAMA1P25391 3075 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 LNP1A1A4G5 178 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 TRIM49BA6NDI0 452 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 PSMA7O14818 248 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 KHNYNO15037 678 aaKnown RBP18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 ZBED1O96006 694 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 HOXB2P14652 356 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 TBXAS1P24557 533 aaPredicted RBP18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 BCAT1P54687 386 aa18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 YWHAGP61981 247 aaKnown RBP eCLIP18.06■□□□□ 0.48
VPS9D1-203ENST00000563798 SGO2Q562F6 1265 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms