RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 P3H1Q32P28 736 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 SLC39A4Q6P5W5 647 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 C12orf56Q8IXR9 622 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 CHPFQ8IZ52 775 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 ZNF516Q92618 1163 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 EXOC2Q96KP1 924 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 HSFY1Q96LI6 401 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 SAGE1Q9NXZ1 904 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 FBXL5Q9UKA1 691 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 CITO14578 2027 aa9.58□□□□□ -0.88
VPS39-205ENST00000562258 OTUD4Q01804 1114 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 STARD3Q14849 445 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 TAF5Q15542 800 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 TTC19Q6DKK2 380 aaPredicted RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 HERC6Q8IVU3 1022 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 MYCBPAPQ8TBZ2 947 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 CCHCR1Q8TD31 782 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 WNT8BQ93098 351 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 ZMAT2Q96NC0 199 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 CPXM1Q96SM3 734 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 RAD9AQ99638 391 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 TMEM121Q9BTD3 319 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 DUSP16Q9BY84 665 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 SEZ6LQ9BYH1 1024 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 VPS11Q9H270 941 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 CWC15Q9P013 229 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 HMGXB4Q9UGU5 601 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 DNMT3LQ9UJW3 386 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 SLC30A1Q9Y6M5 507 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 TBX18O95935 607 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 CHRNA3P32297 505 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 NOS2P35228 1153 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 SLC5A3P53794 718 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 VCPP55072 806 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 INTS6LQ5JSJ4 861 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 RETSATQ6NUM9 610 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 PMF1Q6P1K2 205 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 RD3Q7Z3Z2 195 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 HS6ST3Q8IZP7 471 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 TFAP2BQ92481 460 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 HDAC11Q96DB2 347 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 LRRC1Q9BTT6 524 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 MPP6Q9NZW5 540 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 CFAP97Q9P2B7 532 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 LCMT1Q9UIC8 334 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 A0A1W2PQH9 124 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 E2F8A0AVK6 867 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 MT-ND3P03897 115 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 ALDH3A1P30838 453 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 DEFB103AP81534 67 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 FMO1Q01740 532 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 SOWAHAQ2M3V2 549 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 NXNQ6DKJ4 435 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 EPM2AIP1Q7L775 607 aaPredicted RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 CFAP61Q8NHU2 1237 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 CDC26Q8NHZ8 85 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 RILPQ96NA2 401 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 XPO6Q96QU8 1125 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 MAGEB5Q9BZ81 275 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS39-205ENST00000562258 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.57□□□□□ -0.88
VPS39-205ENST00000562258 USP54Q70EL1 1684 aa9.57□□□□□ -0.88
VPS39-205ENST00000562258 FAM155AB1AL88 458 aaPredicted RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 AFF1P51825 1210 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 CYP4F8P98187 520 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 PTPN20Q4JDL3 420 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ERMARDQ5T6L9 678 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 MFSD7Q6UXD7 560 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 SERPINA13PQ6UXR4 307 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 GPATCH11Q8N954 259 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 SPDYE1Q8NFV5 336 aaPredicted RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 GANQ9H2C0 597 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 IL23AQ9NPF7 189 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 SCN7AQ01118 1682 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 O00370 1275 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ADAMTS4O75173 837 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 CILPO75339 1184 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 STAMBPO95630 424 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 PAMP19021 973 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 PPARGP37231 505 aaPredicted RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 RPS6KA2Q15349 733 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ZCWPW2Q504Y3 356 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 THEMIS2Q5TEJ8 643 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 MON1AQ86VX9 555 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 C3orf20Q8ND61 904 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 JOSD2Q8TAC2 188 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 GRIN3AQ8TCU5 1115 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 TFB1MQ8WVM0 346 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 MYOCQ99972 504 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ZSWIM1Q9BR11 485 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 RBM12Q9NTZ6 932 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 MIOSQ9NXC5 875 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 A0A0U1RQJ8 604 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ZNF197O14709 1029 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 RNASEH1O60930 286 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 GALTP07902 379 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 HSPA8P11142 646 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 ACADMP11310 421 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 KCNA5P22460 613 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 NUGGCQ68CJ6 796 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms