RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 KRT38O76015 456 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 SORBS2O94875 1100 aaKnown RBP13.8□□□□□ -0.2
CLK3-206ENST00000562078 SLC25A27O95847 323 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 MXI1P50539 228 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 CETN1Q12798 172 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 MTERF2Q49AM1 385 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 EPC2Q52LR7 807 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 C11orf63Q6NUN7 778 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 ABHD15Q6UXT9 468 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 POU5F2Q8N7G0 328 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 ICA1LQ8NDH6 482 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 CCDC127Q96BQ5 260 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 VPS50Q96JG6 964 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 ZFRQ96KR1 1074 aaKnown RBP13.8□□□□□ -0.2
CLK3-206ENST00000562078 SYT11Q9BT88 431 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 EIF2AQ9BY44 585 aaKnown RBP13.8□□□□□ -0.2
CLK3-206ENST00000562078 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
CLK3-206ENST00000562078 CYP26B1Q9NR63 512 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 COQ6Q9Y2Z9 468 aa13.8□□□□□ -0.2
CLK3-206ENST00000562078 FOXN3O00409 490 aaPredicted RBP13.79□□□□□ -0.2
CLK3-206ENST00000562078 DGAT1O75907 488 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SUPT20HL2P0C7V6 817 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 CPA3P15088 417 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 TNFAIP3P21580 790 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 MAGEA4P43358 317 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 IGBP1P78318 339 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 KRT81Q14533 505 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 STXBP2Q15833 593 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 ERLEC1Q96DZ1 483 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 COX4I2Q96KJ9 171 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SMYD3Q9H7B4 428 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 PLGRKTQ9HBL7 147 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SLC17A7Q9P2U7 560 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 CAPN14A8MX76 684 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 GOLGA8RI6L899 631 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 PIAS1O75925 651 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 RFX1P22670 979 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 FDFT1P37268 417 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 ACADVLP49748 655 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SNRPFP62306 86 aaKnown RBP13.79□□□□□ -0.2
CLK3-206ENST00000562078 MYBPC1Q00872 1141 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 CD300CQ08708 224 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 PTK6Q13882 451 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SEPT7Q16181 437 aaKnown RBP13.79□□□□□ -0.2
CLK3-206ENST00000562078 Q3C1V9 767 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SLC39A4Q6P5W5 647 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 PASD1Q8IV76 773 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 RHOT2Q8IXI1 618 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 MCPH1Q8NEM0 835 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 SLCO2A1Q92959 643 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 FAM118BQ9BPY3 351 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 NEURL2Q9BR09 285 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 TMEM117Q9H0C3 514 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 POLR3FQ9H1D9 316 aaPredicted RBP13.79□□□□□ -0.2
CLK3-206ENST00000562078 GPBP1L1Q9HC44 474 aaPredicted RBP13.79□□□□□ -0.2
CLK3-206ENST00000562078 RRN3Q9NYV6 651 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 ZNHIT2Q9UHR6 403 aa13.79□□□□□ -0.2
CLK3-206ENST00000562078 HNRNPDLO14979 420 aaKnown RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 SPOPO43791 374 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 ZBED1O96006 694 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 CD48P09326 243 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 ZNF157P51786 506 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 ZNF200P98182 395 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 SPIDRQ14159 915 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 FASTKD3Q14CZ7 662 aaKnown RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 AAGABQ6PD74 315 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 POTEHQ6S545 545 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 MARVELD2Q8N4S9 558 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 SCAIQ8N9R8 606 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 DNERQ8NFT8 737 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 TCP10LQ8TDR4 215 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 GTF3C2Q8WUA4 911 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 POMGNT1Q8WZA1 660 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 KAT5Q92993 513 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 CD101Q93033 1021 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 CNBD2Q96M20 576 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 KLF6Q99612 283 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 TPK1Q9H3S4 243 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 A0A088AWK7 358 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 A0A1B0GTW7 788 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 ARHGAP42A6NI28 874 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 FOXD2O60548 495 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 C6orf222P0C671 652 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 RBP3P10745 1247 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 XIAPP98170 497 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 EFTUD2Q15029 972 aaKnown RBP eCLIP13.78□□□□□ -0.29e-8■■■■□ 21.4
CLK3-206ENST00000562078 ERI1Q8IV48 349 aaKnown RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 SLC20A1Q8WUM9 679 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 C17orf75Q9HAS0 396 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 SAYSD1Q9NPB0 183 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 PDLIM7Q9NR12 457 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 TOPORSQ9NS56 1045 aaPredicted RBP13.78□□□□□ -0.2
CLK3-206ENST00000562078 INPP5FQ9Y2H2 1132 aa13.78□□□□□ -0.2
CLK3-206ENST00000562078 SPECC1L-ADORA2AF8WAN1 911 aa13.77□□□□□ -0.21
CLK3-206ENST00000562078 DNAJA2O60884 412 aa13.77□□□□□ -0.21
CLK3-206ENST00000562078 STAMBPO95630 424 aa13.77□□□□□ -0.21
CLK3-206ENST00000562078 FTLP02792 175 aaPredicted RBP13.77□□□□□ -0.21
CLK3-206ENST00000562078 FUCA1P04066 466 aa13.77□□□□□ -0.21
CLK3-206ENST00000562078 CCNIQ14094 377 aa13.77□□□□□ -0.21
CLK3-206ENST00000562078 KCTD2Q14681 263 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms