RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TOGARAM2Q6ZUX3 1019 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 CCDC186Q7Z3E2 898 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 PIGZQ86VD9 579 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 ZC3H3Q8IXZ2 948 aaKnown RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 TTC39CQ8N584 583 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 ZNF513Q8N8E2 541 aaPredicted RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 ANKRD52Q8NB46 1076 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 UBA3Q8TBC4 463 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 HMGB4Q8WW32 186 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 FAXDC2Q96IV6 333 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 TIGD1Q96MW7 591 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 POLMQ9NP87 494 aaPredicted RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 VPS45Q9NRW7 570 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 PLK2Q9NYY3 685 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 BCCIPQ9P287 314 aaKnown RBP eCLIP10.75□□□□□ -0.69
LDLR-214ENST00000560628 WDR35Q9P2L0 1181 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 ARMCX3Q9UH62 379 aaPredicted RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 HOOK1Q9UJC3 728 aaKnown RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 RASAL2Q9UJF2 1139 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 MAN1B1Q9UKM7 699 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 HCN2Q9UL51 889 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 COQ4Q9Y3A0 265 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 PCDHGA5Q9Y5G8 931 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 ABCA7Q8IZY2 2146 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 TCRBV21S2A2A0A5A6 115 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 BCLAF3A2AJT9 711 aaKnown RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 PSMA7O14818 248 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 MAP3K13O43283 966 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 CD19P15391 556 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 DHPSP49366 369 aaPredicted RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 PSEN1P49768 467 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 LRRC63Q05C16 580 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 CUL2Q13617 745 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 GOLGA7BQ2TAP0 167 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 HSF5Q4G112 596 aaPredicted RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 PREPLQ4J6C6 727 aaPredicted RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 PPM1JQ5JR12 505 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 STPG1Q5TH74 334 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 EGFLAMQ63HQ2 1017 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 ARHGAP17Q68EM7 881 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 Q6ZNB5 142 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 NUDT18Q6ZVK8 323 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 RSRC2Q7L4I2 434 aaKnown RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 TERB1Q8NA31 727 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 SLC35C1Q96A29 364 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 P2RY11Q96G91 374 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 DHTKD1Q96HY7 919 aaPredicted RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 XPO6Q96QU8 1125 aaKnown RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 ACOX2Q99424 681 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 DUSP9Q99956 384 aaKnown RBP10.74□□□□□ -0.69
LDLR-214ENST00000560628 UBXN6Q9BZV1 441 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 CLIC5Q9NZA1 410 aa10.74□□□□□ -0.69
LDLR-214ENST00000560628 SPTBN2O15020 2390 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MYO16Q9Y6X6 1858 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 SLC12A8A0AV02 714 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 PRRT4C9JH25 899 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 BIN1O00499 593 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 CACNG3O60359 315 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 GADD45BO75293 160 aaPredicted RBP10.73□□□□□ -0.69
LDLR-214ENST00000560628 CALCAP01258 141 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 CISD3P0C7P0 127 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 NTSR1P30989 418 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 CORO1AP31146 461 aaKnown RBP10.73□□□□□ -0.69
LDLR-214ENST00000560628 P2RY2P41231 377 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 TKTL1P51854 596 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 SLC8A3P57103 927 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 YWHAGP61981 247 aaKnown RBP eCLIP10.73□□□□□ -0.69
LDLR-214ENST00000560628 COG7P83436 770 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 PDE4CQ08493 712 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 STIM1Q13586 685 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 CCDC40Q4G0X9 1142 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 SGO2Q562F6 1265 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 RAB41Q5JT25 222 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 PMS2CLQ68D20 193 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 ARMCX6Q7L4S7 300 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 TADA2BQ86TJ2 420 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 TMEFF1Q8IYR6 380 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 ARHGAP18Q8N392 663 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 DEFB119Q8N690 84 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 OLIG1Q8TAK6 271 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 KCNV2Q8TDN2 545 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 PIGKQ92643 395 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 ULBP1Q9BZM6 244 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MARK1Q9P0L2 795 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MARCH2Q9P0N8 246 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MBD1Q9UIS9 605 aaPredicted RBP10.73□□□□□ -0.69
LDLR-214ENST00000560628 TSPAN16Q9UKR8 245 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 EML5Q05BV3 1969 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 MYO18AQ92614 2054 aaKnown RBP10.73□□□□□ -0.69
LDLR-214ENST00000560628 SPAG17Q6Q759 2223 aa10.73□□□□□ -0.69
LDLR-214ENST00000560628 A0A1W2PQF6 199 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 PATE3B3GLJ2 98 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 PPP1R3GB7ZBB8 358 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 WASH3PC4AMC7 463 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 RNF225M0QZC1 329 aaPredicted RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 TM4SF5O14894 197 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 XPO1O14980 1071 aaKnown RBP10.72□□□□□ -0.69
LDLR-214ENST00000560628 ZBED1O96006 694 aa10.72□□□□□ -0.69
LDLR-214ENST00000560628 VDRP11473 427 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms