RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 MAGED2Q9UNF1 606 aaPredicted RBP12.71□□□□□ -0.37
HERC1-205ENST00000559886 DENND4CQ5VZ89 1909 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 OBSL1O75147 1896 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 PRPSAP2O60256 369 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 CEP104O60308 925 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 PYGMP11217 842 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 GJC1P36383 396 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 ZNF211Q13398 564 aaPredicted RBP12.71□□□□□ -0.37
HERC1-205ENST00000559886 RTL10Q7L3V2 364 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 EXD1Q8NHP7 514 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 ACTRT1Q8TDG2 376 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 OVCA2Q8WZ82 227 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 PSMG2Q969U7 264 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 ZWILCHQ9H900 591 aa12.71□□□□□ -0.37
HERC1-205ENST00000559886 DDX56Q9NY93 547 aaKnown RBP12.71□□□□□ -0.37
HERC1-205ENST00000559886 TTC7AQ9ULT0 858 aaPredicted RBP12.71□□□□□ -0.37
HERC1-205ENST00000559886 PDE2AO00408 941 aaPredicted RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 RIOK3O14730 519 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 ZRANB2O95218 330 aaKnown RBP eCLIP12.7□□□□□ -0.38
HERC1-205ENST00000559886 IGLV3-25P01717 112 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 RDXP35241 583 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 ATXN1P54253 815 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 SMAD3P84022 425 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 DEUP1Q05D60 604 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 BOLA3Q53S33 107 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 SCYL2Q6P3W7 929 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 DNAJB7Q7Z6W7 309 aaPredicted RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 PDZD8Q8NEN9 1154 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 DQX1Q8TE96 717 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 ASB3Q9Y575 518 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 CLASP2O75122 1294 aaKnown RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 F9P00740 461 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 C8AP07357 584 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 RARAP10276 462 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 EIF4EBP2Q13542 120 aaPredicted RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 TAF12Q16514 161 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 SMTNL2Q2TAL5 461 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 KCNT1Q5JUK3 1230 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 SNX30Q5VWJ9 437 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 MSANTD2Q6P1R3 559 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 ITIH5Q86UX2 942 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 RCOR2Q8IZ40 523 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 CMASQ8NFW8 434 aaPredicted RBP12.7□□□□□ -0.38
HERC1-205ENST00000559886 ADAM32Q8TC27 787 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 RNF139Q8WU17 664 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 SLC22A17Q8WUG5 538 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 TEKT4Q8WW24 435 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 TIFAQ96CG3 184 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 SMOC2Q9H3U7 446 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 PLEKHA4Q9H4M7 779 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 PIGVQ9NUD9 493 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.7□□□□□ -0.38
HERC1-205ENST00000559886 DDIT4Q9NX09 232 aa12.7□□□□□ -0.38
HERC1-205ENST00000559886 EPOPA6NHQ4 379 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 RALAP11233 206 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 RARGP13631 454 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 PAFAH1B1P43034 410 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 CKAP4Q07065 602 aaKnown RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 NME3Q13232 169 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 CCDC181Q5TID7 509 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 AADACL2Q6P093 401 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 CHRDL2Q6WN34 429 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 ZNF572Q7Z3I7 529 aaPredicted RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 TAC4Q86UU9 113 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 ZNF276Q8N554 614 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 GDPD5Q8WTR4 605 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 RBM41Q96IZ5 413 aaKnown RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 CARD6Q9BX69 1037 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 FAM204AQ9H8W3 233 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 WDR6Q9NNW5 1121 aaKnown RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 KLHL11Q9NVR0 708 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 DOCK6Q96HP0 2047 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 MDM4O15151 490 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 LRG1P02750 347 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 KRT1P04264 644 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 GBP1P32455 592 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 ZFYVE27Q5T4F4 411 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 ERMARDQ5T6L9 678 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 SEL1L2Q5TEA6 688 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 RSRC2Q7L4I2 434 aaKnown RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 FAM131BQ86XD5 332 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 CEP112Q8N8E3 955 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 RAPGEF5Q92565 580 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 CASP10Q92851 521 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 ACSF2Q96CM8 615 aaPredicted RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 ZNF512Q96ME7 567 aaPredicted RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 OLA1Q9NTK5 396 aaKnown RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.69□□□□□ -0.38
HERC1-205ENST00000559886 SMARCAL1Q9NZC9 954 aa12.69□□□□□ -0.38
HERC1-205ENST00000559886 UXTQ9UBK9 157 aaPredicted RBP12.69□□□□□ -0.38
HERC1-205ENST00000559886 SYNJ2BP-COX16A0A087WUM0 186 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 ZNF840PA6NDX5 716 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 C3orf70A6NLC5 250 aaPredicted RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 PGRMC1O00264 195 aaKnown RBP12.68□□□□□ -0.38
HERC1-205ENST00000559886 IRAK2O43187 625 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 PPP3CCP48454 512 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 CXCR3P49682 368 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 COPS2P61201 443 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 CCDC185Q8N715 623 aa12.68□□□□□ -0.38
HERC1-205ENST00000559886 HDAC7Q8WUI4 952 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms