RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PRPF18Q99633 342 aaKnown RBP7.34□□□□□ -1.23
USP3-210ENST00000559192 HSD17B14Q9BPX1 270 aa7.34□□□□□ -1.23
USP3-210ENST00000559192 TMEM79Q9BSE2 394 aa7.34□□□□□ -1.23
USP3-210ENST00000559192 FRMD8P1Q9BZ68 369 aaPredicted RBP7.34□□□□□ -1.23
USP3-210ENST00000559192 THAP1Q9NVV9 213 aa7.34□□□□□ -1.23
USP3-210ENST00000559192 ITGB1BP2Q9UKP3 347 aa7.34□□□□□ -1.23
USP3-210ENST00000559192 TPP1O14773 563 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 PDGFRBP09619 1106 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 THRAP10827 490 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 IL10P22301 178 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 SPRP35270 261 aaPredicted RBP7.34□□□□□ -1.24
USP3-210ENST00000559192 STAT5BP51692 787 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 PEX6Q13608 980 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 NRF1Q16656 503 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 AMHR2Q16671 573 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 EFHC2Q5JST6 749 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 CHADLQ6NUI6 762 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 DSTYKQ6XUX3 929 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 LPCAT2Q7L5N7 544 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 CCNJLQ8IV13 435 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 FAM172AQ8WUF8 416 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 C10orf82Q8WW14 230 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 ATP6V1E2Q96A05 226 aa7.34□□□□□ -1.24
USP3-210ENST00000559192 FAM49AQ9H0Q0 323 aaPredicted RBP7.34□□□□□ -1.24
USP3-210ENST00000559192 MMADHCQ9H3L0 296 aaPredicted RBP7.34□□□□□ -1.24
USP3-210ENST00000559192 DMAP1Q9NPF5 467 aaPredicted RBP7.34□□□□□ -1.24
USP3-210ENST00000559192 UMODL1Q5DID0 1318 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 hCG_1818297A0A087WSY0 165 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 C6orf222P0C671 652 aaPredicted RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 PAMP19021 973 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 HSPA13P48723 471 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 CLK2P49760 499 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 MAPK10P53779 464 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ADARP55265 1226 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 MMRN1Q13201 1228 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 UGCGQ16739 394 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ANKRD22Q5VYY1 191 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 TDRD10Q5VZ19 366 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 MAP4K3Q8IVH8 894 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 C12orf50Q8NA57 414 aaPredicted RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 DDI1Q8WTU0 396 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 LZICQ8WZA0 190 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 NCLNQ969V3 563 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 PRMT6Q96LA8 375 aaPredicted RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 TRIM39Q9HCM9 518 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 SNX9Q9Y5X1 595 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 RPS6KL1Q9Y6S9 549 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 TUBGCP6Q96RT7 1819 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 CSDE1O75534 798 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 NPTXRO95502 500 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ASMTLO95671 621 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 OATP04181 439 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 S100A9P06702 114 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 LYNP07948 512 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 CPA3P15088 417 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 KDELR1P24390 212 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ABCG1P45844 678 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 HMGCS2P54868 508 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 TNFAIP2Q03169 654 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 FOLH1Q04609 750 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 MAPRE2Q15555 327 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ARL13BQ3SXY8 428 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ATF7IP2Q5U623 682 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 LRRC8BQ6P9F7 803 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 MTHFD1LQ6UB35 978 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 C4orf19Q8IY42 314 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 RBM15BQ8NDT2 890 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 BHLHE22Q8NFJ8 381 aaPredicted RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 ZNF333Q96JL9 665 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ILKAPQ9H0C8 392 aaPredicted RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 NDUFA13Q9P0J0 144 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 MYH6P13533 1939 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 MYH2Q9UKX2 1941 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ENTPD3O75355 529 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 NELFEP18615 380 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 PHKA2P46019 1235 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 LBRQ14739 615 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 PGM5Q15124 567 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 KCTD21Q4G0X4 260 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 APOBEC3HQ6NTF7 200 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 B3GNT6Q6ZMB0 384 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 STRA8Q7Z7C7 330 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 SNX32Q86XE0 403 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 TRIM63Q969Q1 353 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 PPP1R14BQ96C90 147 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 FAXDC2Q96IV6 333 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 C2orf40Q9H1Z8 148 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ACAD9Q9H845 621 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 MAN1C1Q9NR34 630 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 SAC3D1A6NKF1 404 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 PCP4L1A6NKN8 68 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ALOX15BO15296 676 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 LSM8O95777 96 aaKnown RBP7.33□□□□□ -1.24
USP3-210ENST00000559192 LINGO3P0C6S8 592 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 RBL1P28749 1068 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 EFNA5P52803 228 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 RTP1P59025 263 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 ATP1A4Q13733 1029 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 INPP5AQ14642 412 aa7.33□□□□□ -1.24
USP3-210ENST00000559192 KCTD2Q14681 263 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms