RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 LPIN2Q92539 896 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SNX19Q92543 992 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 WASF1Q92558 559 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 GLG1Q92896 1179 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 C3orf49Q96BT1 292 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FAM136AQ96C01 138 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TBATAQ96M53 351 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 COG8Q96MW5 612 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TRAPPC9Q96Q05 1148 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PYM1Q9BRP8 204 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 C17orf80Q9BSJ5 609 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 DDX23Q9BUQ8 820 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 ACTRT3Q9BYD9 372 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ALOXE3Q9BYJ1 711 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ARHGAP39Q9C0H5 1083 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 VPS16Q9H269 839 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TP63Q9H3D4 680 aaPredicted RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 FAM83DQ9H4H8 585 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ELAC1Q9H777 363 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 NRDE2Q9H7Z3 1164 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 RMI1Q9H9A7 625 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CHODLQ9H9P2 273 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 UNKLQ9H9P5 680 aaKnown RBP1.89□□□□□ -2.11
USP3-209ENST00000558925 SAYSD1Q9NPB0 183 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 RIC8AQ9NPQ8 531 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 AKIP1Q9NQ31 210 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 SMC4Q9NTJ3 1288 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 TERF2IPQ9NYB0 399 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 RNF181Q9P0P0 153 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 KIF17Q9P2E2 1029 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 DKK3Q9UBP4 350 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PGAP2Q9UHJ9 254 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 KCNE5Q9UJ90 142 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 ANAPC4Q9UJX5 808 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 KCND3Q9UK17 655 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PACSIN3Q9UKS6 424 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 CNTN6Q9UQ52 1028 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 PCDHB7Q9Y5E2 793 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 FPGT-TNNI3KV9GXZ4 949 aa1.89□□□□□ -2.11
USP3-209ENST00000558925 COL3A1P02461 1466 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 KAT6AQ92794 2004 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 MYADML2A6NDP7 307 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 FAM90A20PA6NIJ5 464 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 A6NLC8 198 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 E7ENX8 843 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 E7EVH7 732 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 STX16-NPEPL1H3BU86 382 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 EXOC5O00471 708 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 STX16O14662 325 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TRIM24O15164 1050 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 WDR47O94967 919 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 SPDEFO95238 335 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 MBD4O95243 580 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TBX18O95935 607 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 PRKCBP05771 671 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 FESP07332 822 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 CDK4P11802 303 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ALADP13716 330 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 DRD1P21728 446 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 BDNFP23560 247 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RBL1P28749 1068 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 MCM5P33992 734 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 GATMP50440 423 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 PDE6CP51160 858 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 VAV2P52735 878 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RPS7P62081 194 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 MPP1Q00013 466 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TIAL1Q01085 375 aaKnown RBP eCLIP1.88□□□□□ -2.11
USP3-209ENST00000558925 TAP2Q03519 686 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RNASELQ05823 741 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SF3A3Q12874 501 aaKnown RBP eCLIP1.88□□□□□ -2.11
USP3-209ENST00000558925 FOXD4Q12950 439 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 DDX10Q13206 875 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SLC12A1Q13621 1099 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 CCNIQ14094 377 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 E2F2Q14209 437 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 HLXQ14774 488 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 SF3B3Q15393 1217 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 MAPRE1Q15691 268 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 TRIM71Q2Q1W2 868 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 P3H1Q32P28 736 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 BEAN1Q3B7T3 259 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ADCK5Q3MIX3 580 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 LRRC24Q50LG9 513 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 RABL3Q5HYI8 236 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 GPATCH4Q5T3I0 446 aaKnown RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 TTC22Q5TAA0 569 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ANKRD45Q5TZF3 282 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 WDR78Q5VTH9 848 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 ICE2Q659A1 982 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 OLFML1Q6UWY5 402 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 C1orf122Q6ZSJ8 110 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 PIK3AP1Q6ZUJ8 805 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 MICALCLQ6ZW33 695 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 GPR149Q86SP6 731 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 TBC1D1Q86TI0 1168 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 KRT73Q86Y46 540 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 IZUMO1Q8IYV9 350 aa1.88□□□□□ -2.11
USP3-209ENST00000558925 FSTL5Q8N475 847 aaPredicted RBP1.88□□□□□ -2.11
USP3-209ENST00000558925 NAXEQ8NCW5 288 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms