RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TSPYL2Q9H2G4 693 aaPredicted RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 AGO3Q9H9G7 860 aaKnown RBP11.04□□□□□ -0.64
CUX1-217ENST00000558836 ETNK1Q9HBU6 452 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 TMEM30AQ9NV96 361 aa11.04□□□□□ -0.64
CUX1-217ENST00000558836 MYBPHLA2RUH7 354 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 CHRNA1P02708 482 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 PTPN1P18031 435 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 AXLP30530 894 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SULT1E1P49888 294 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SCNN1GP51170 649 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 GEMIN4P57678 1058 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 RNASELQ05823 741 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 KBTBD12Q3ZCT8 623 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SV2CQ496J9 727 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 KCNT2Q6UVM3 1135 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 ARHGEF18Q6ZSZ5 1173 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 PRPF39Q86UA1 669 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 SPATS2Q86XZ4 545 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 ANKS4BQ8N8V4 417 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 ATP11CQ8NB49 1132 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 CCT6BQ92526 530 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 GDAP2Q9NXN4 497 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 DDX43Q9NXZ2 648 aaKnown RBP11.03□□□□□ -0.64
CUX1-217ENST00000558836 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.03□□□□□ -0.64
CUX1-217ENST00000558836 TCRBV9S1A1TA0A576 114 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 DPYSL4O14531 572 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SNX3O60493 162 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 POMCP01189 267 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 AMHP03971 560 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SETSIPP0DME0 302 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 KCNJ11Q14654 390 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SLC26A9Q7LBE3 791 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 SENP8Q96LD8 212 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 CSPG4P5Q96PW8 444 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 APBA2Q99767 749 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 CCDC134Q9H6E4 229 aa11.03□□□□□ -0.64
CUX1-217ENST00000558836 TTC3P53804 2025 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 NUP205Q92621 2012 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 DCAF8L1A6NGE4 600 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 CCT8L1PA6NM43 557 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 NRP1O14786 923 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 AKR1A1P14550 325 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 TTC31Q49AM3 519 aaPredicted RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 XKR4Q5GH76 650 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 SLC9A4Q6AI14 798 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 CGB2Q6NT52 195 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 RGMBQ6NW40 437 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 CLEC20AQ6ZU45 233 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 CEP128Q6ZU80 1094 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 YTHDF3Q7Z739 585 aaKnown RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 CTAGE3PQ8IX95 158 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 STK32AQ8WU08 396 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 TRIB2Q92519 343 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 TNIP3Q96KP6 325 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 PPP1R10Q96QC0 940 aaKnown RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 C11orf84Q9BUA3 381 aaPredicted RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 PRDM16Q9HAZ2 1276 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 LRRC4Q9HBW1 653 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 CRTAC1Q9NQ79 661 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 KRT82Q9NSB4 513 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.64
CUX1-217ENST00000558836 PSMC3IPQ9P2W1 217 aaPredicted RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 ZMYND8Q9ULU4 1186 aaPredicted RBP11.02□□□□□ -0.64
CUX1-217ENST00000558836 MANSC4A6NHS7 340 aaPredicted RBP11.02□□□□□ -0.65
CUX1-217ENST00000558836 M0QYT0 321 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 MDM4O15151 490 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 TAC1P20366 129 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 MSH2P43246 934 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 SCTRP47872 440 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 TKTL1P51854 596 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 CRADDP78560 199 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 MRPS6P82932 125 aaKnown RBP11.02□□□□□ -0.65
CUX1-217ENST00000558836 BSPRYQ5W0U4 402 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 MPP5Q8N3R9 675 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 PGLYRP2Q96PD5 576 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 KATNAL1Q9BW62 490 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 DUSP16Q9BY84 665 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 FRMD8P1Q9BZ68 369 aaPredicted RBP11.02□□□□□ -0.65
CUX1-217ENST00000558836 BPTFQ12830 3046 aa11.02□□□□□ -0.65
CUX1-217ENST00000558836 ARL5CA6NH57 179 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 F8W810 466 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 M0QZ92 97 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 XPOTO43592 962 aaKnown RBP11.01□□□□□ -0.65
CUX1-217ENST00000558836 UGT1A9O60656 530 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 USP17L7P0C7H9 530 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 GNAT1P11488 350 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 NPR3P17342 541 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 DESP17661 470 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 PHBP35232 272 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 RDXP35241 583 aaKnown RBP11.01□□□□□ -0.65
CUX1-217ENST00000558836 THPOP40225 353 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 PNPLA4P41247 253 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 MATKP42679 507 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 YWHAZP63104 245 aaKnown RBP11.01□□□□□ -0.65
CUX1-217ENST00000558836 CAP1Q01518 475 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 ACTN3Q08043 901 aaPredicted RBP11.01□□□□□ -0.65
CUX1-217ENST00000558836 DPYSL2Q16555 572 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 EFHC2Q5JST6 749 aa11.01□□□□□ -0.65
CUX1-217ENST00000558836 EDEM1Q92611 657 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms