RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 SLC38A7Q9NVC3 462 aa8.65□□□□□ -1.02
SPG11-209ENST00000558253 RRN3Q9NYV6 651 aa8.65□□□□□ -1.02
SPG11-209ENST00000558253 SNX9Q9Y5X1 595 aa8.65□□□□□ -1.02
SPG11-209ENST00000558253 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.65□□□□□ -1.02
SPG11-209ENST00000558253 POLR2AP24928 1970 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 A8MXQ7 604 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 KPNA7A9QM74 516 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ANKRD65E5RJM6 399 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 RNF223E7ERA6 249 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 HAS3O00219 553 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 DNM1LO00429 736 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 XPO1O14980 1071 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 TYROBPO43914 113 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 KRT37O76014 449 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FBXO21O94952 628 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 S1PR4O95977 384 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ZBED1O96006 694 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 MT-ND3P03897 115 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ATP5BP06576 529 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 CYP2C9P11712 490 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 MLNP12872 115 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ETS1P14921 441 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 CA4P22748 312 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 WARSP23381 471 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 GCAP28676 217 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 LRPAP1P30533 357 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FDFT1P37268 417 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 TAF6P49848 677 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SERPINB9P50453 376 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 GPX6P59796 221 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 DYNLT1P63172 113 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ADAM17P78536 824 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 BASP1P80723 227 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 ZNF200P98182 395 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 BNIP1Q12981 228 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 NAB1Q13506 487 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 KCNJ11Q14654 390 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SNCBQ16143 134 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SMTNL2Q2TAL5 461 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SLC45A4Q5BKX6 768 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 KCNT1Q5JUK3 1230 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 TMEM63BQ5T3F8 832 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 PPP1R26Q5T8A7 1209 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 SPRYD7Q5W111 196 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 OLFML2BQ68BL8 750 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 PMF1Q6P1K2 205 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ZNF449Q6P9G9 518 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 DLK2Q6UY11 383 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 CDR2LQ86X02 465 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 UNC45BQ8IWX7 931 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 EMC1Q8N766 993 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 CCDC63Q8NA47 563 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 GLIS1Q8NBF1 620 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FBXO36Q8NEA4 188 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SLC44A1Q8WWI5 657 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 BRI3BPQ8WY22 251 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 KCTD13Q8WZ19 329 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 C18orf25Q96B23 403 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 RAB3IPQ96QF0 476 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 SLC9A7Q96T83 725 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 HNRNPABQ99729 332 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 USB1Q9BQ65 265 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 NAT9Q9BTE0 207 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 C11orf84Q9BUA3 381 aaPredicted RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 TRIM62Q9BVG3 475 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FAM117AQ9C073 453 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 BRD8Q9H0E9 1235 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 AP5M1Q9H0R1 490 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 PCDH18Q9HCL0 1135 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SLC40A1Q9NP59 571 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 TXLNGQ9NUQ3 528 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FGFR1OP2Q9NVK5 253 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 DNAJC17Q9NVM6 304 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 MKS1Q9NXB0 559 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SNTG2Q9NY99 539 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.64□□□□□ -1.03
SPG11-209ENST00000558253 HMGXB4Q9UGU5 601 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 TBK1Q9UHD2 729 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 GNEQ9Y223 722 aaKnown RBP8.64□□□□□ -1.03
SPG11-209ENST00000558253 TEX264Q9Y6I9 313 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 USH1CQ9Y6N9 552 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SCN4AP35499 1836 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 ZNF236Q9UL36 1845 aa8.64□□□□□ -1.03
SPG11-209ENST00000558253 SMIM28A0A1B0GU29 152 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 AP3B1O00203 1094 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 KLF11O14901 512 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 DYNC1LI2O43237 492 aaPredicted RBP8.63□□□□□ -1.03
SPG11-209ENST00000558253 PAPSS1O43252 624 aaPredicted RBP8.63□□□□□ -1.03
SPG11-209ENST00000558253 MGRN1O60291 552 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 HUS1O60921 280 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 TGDSO95455 350 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 INHBAP08476 426 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 CD48P09326 243 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 TROVE2P10155 538 aaKnown RBP eCLIP8.63□□□□□ -1.03
SPG11-209ENST00000558253 IL4RP24394 825 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 PRKCHP24723 683 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 ARL4AP40617 200 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 MATKP42679 507 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 CDK18Q07002 472 aa8.63□□□□□ -1.03
SPG11-209ENST00000558253 MPP2Q14168 576 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms