RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SLFN12LQ6IEE8 588 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 RTL10Q7L3V2 364 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 NT5DC3Q86UY8 548 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF677Q86XU0 584 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 MFSD6LQ8IWD5 586 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 FBXL13Q8NEE6 735 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 LMO3Q8TAP4 145 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ZSCAN18Q8TBC5 510 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 GAB3Q8WWW8 586 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 SHC3Q92529 594 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 BICD1Q96G01 975 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 HES6Q96HZ4 224 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 PSMB7Q99436 277 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 TARS2Q9BW92 718 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 FAM129AQ9BZQ8 928 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 UBE2TQ9NPD8 197 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ST7Q9NRC1 585 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 SEPT11Q9NVA2 429 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 POLR3BQ9NW08 1133 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 UVRAGQ9P2Y5 699 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 AJAP1Q9UKB5 411 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 INSL5Q9Y5Q6 135 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 BACE2Q9Y5Z0 518 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 PTPRDP23468 1912 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 CELSR3Q9NYQ7 3312 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 HELZ2Q9BYK8 2649 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ADAMTS9Q9P2N4 1935 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 SPECC1L-ADORA2AF8WAN1 911 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TMEM189-UBE2V1I3L0A0 370 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 PRRG1O14668 218 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 RPP40O75818 363 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 B3GAT3O94766 335 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ZIC2O95409 532 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 PIGRP01833 764 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 CTHP32929 405 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 OSTNP61366 133 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 GCNT1Q02742 428 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 CCINQ13939 588 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 DHX34Q14147 1143 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 PON2Q15165 354 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TEAD2Q15562 447 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 SPDYCQ5MJ68 293 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TRIM72Q6ZMU5 477 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 PDZD4Q76G19 769 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 EFCAB13Q8IY85 973 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 FAM71AQ8IYT1 594 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 C1orf131Q8NDD1 294 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF461Q8TAF7 563 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 FAM76AQ8TAV0 307 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 DEPDC1BQ8WUY9 529 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ZCCHC14Q8WYQ9 949 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 POMGNT1Q8WZA1 660 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 LOXL4Q96JB6 756 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ZFYVE19Q96K21 471 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 LRRC3BQ96PB8 259 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ACO2Q99798 780 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 SCNM1Q9BWG6 230 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 GPR88Q9GZN0 384 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ZMYND15Q9H091 742 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ISCUQ9H1K1 167 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TMEM134Q9H6X4 195 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TRPV4Q9HBA0 871 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 FAM114A2Q9NRY5 505 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ARHGAP28Q9P2N2 729 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ANKFY1Q9P2R3 1169 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 DMGDHQ9UI17 866 aaKnown RBP11.71□□□□□ -0.53
SHMT2-216ENST00000554975 LCMT1Q9UIC8 334 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 ADAM21Q9UKJ8 722 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 GTF3C4Q9UKN8 822 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TNFSF13BQ9Y275 285 aa11.71□□□□□ -0.53
SHMT2-216ENST00000554975 TNRC6BQ9UPQ9 1833 aaKnown RBP11.7□□□□□ -0.54
SHMT2-216ENST00000554975 MYBPHLA2RUH7 354 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA6CA6NDK9 693 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 FAM187AA6NFU0 413 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA6L10A6NI86 522 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 ZNF233A6NK53 670 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 C4orf47A7E2U8 309 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 TAF4O00268 1085 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 ZNF197O14709 1029 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 MICAL2O94851 1124 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 ADRB2P07550 413 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GOLGA6DP0CG33 693 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 MYBL1P10243 752 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 MYL4P12829 197 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GCLMP48507 274 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 LMAN1P49257 510 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 LIG4P49917 911 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CLCNKBP51801 687 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 KPNA1P52294 538 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-216ENST00000554975 AP3M2P53677 418 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 YARSP54577 528 aaKnown RBP11.7□□□□□ -0.54
SHMT2-216ENST00000554975 ARPP19P56211 112 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CYP24A1Q07973 514 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 PPP3CAQ08209 521 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 STXBP5Q5T5C0 1151 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 CFAP58Q5T655 872 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 SH3PXD2AQ5TCZ1 1133 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 SLC8B1Q6J4K2 584 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 GJB7Q6PEY0 223 aa11.7□□□□□ -0.54
SHMT2-216ENST00000554975 TAS1R3Q7RTX0 852 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms