RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CCZ1P86791 482 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 DCAF6Q58WW2 860 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 FAM78AQ5JUQ0 283 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 PPP1R15BQ5SWA1 713 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 SYPL2Q5VXT5 272 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 DEFB106AQ8N104 65 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ARL14EPQ8N8R7 260 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ZSCAN18Q8TBC5 510 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ATXN2LQ8WWM7 1075 aaKnown RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 ACSF2Q96CM8 615 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 OLA1Q9NTK5 396 aaKnown RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 MYO1AQ9UBC5 1043 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 DNMT3LQ9UJW3 386 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 REXO2Q9Y3B8 237 aaKnown RBP12.8□□□□□ -0.36
SHMT2-209ENST00000553949 PCDHA13Q9Y5I0 950 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 C2orf16Q68DN1 1984 aa12.8□□□□□ -0.36
SHMT2-209ENST00000553949 MBL2P11226 248 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 LAMP2P13473 410 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 WEE1P30291 646 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 NOS2P35228 1153 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 RFC1P35251 1148 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 FLT3P36888 993 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 MATKP42679 507 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 EFEMP1Q12805 493 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 TRNP1Q6NT89 227 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 MSANTD2Q6P1R3 559 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 DCUN1D2Q6PH85 259 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 ARID3BQ8IVW6 561 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 EMC1Q8N766 993 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 TDRD5Q8NAT2 981 aaKnown RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 ACRBPQ8NEB7 543 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 JOSD2Q8TAC2 188 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 DQX1Q8TE96 717 aaKnown RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 CTNNBL1Q8WYA6 563 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 SMARCD2Q92925 531 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 ARHGEF26Q96DR7 871 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 RPGRIP1Q96KN7 1286 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 ASB16Q96NS5 453 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 MCEEQ96PE7 176 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 SMG9Q9H0W8 520 aaKnown RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 MRPL47Q9HD33 250 aaKnown RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 LUC7LQ9NQ29 371 aaKnown RBP12.79□□□□□ -0.36
SHMT2-209ENST00000553949 MARCH2Q9P0N8 246 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 EPS15L1Q9UBC2 864 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 RASAL2Q9UJF2 1139 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 INTUQ9ULD6 942 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 ARHGAP26Q9UNA1 814 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 NR2E1Q9Y466 385 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 SCINQ9Y6U3 715 aa12.79□□□□□ -0.36
SHMT2-209ENST00000553949 C2CD4BA6NLJ0 364 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 C2CD4DB7Z1M9 353 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 PRAMEF12O95522 483 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 PDGFRAP16234 1089 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 RPL7AP62424 266 aaKnown RBP12.78□□□□□ -0.36
SHMT2-209ENST00000553949 KRT83P78385 493 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 TAC4Q86UU9 113 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 MIB1Q86YT6 1006 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 RXFP2Q8WXD0 754 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 USP13Q92995 863 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-209ENST00000553949 ZFRQ96KR1 1074 aaKnown RBP12.78□□□□□ -0.36
SHMT2-209ENST00000553949 ASB2Q96Q27 587 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 DESI2Q9BSY9 194 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 DDX23Q9BUQ8 820 aaKnown RBP12.78□□□□□ -0.36
SHMT2-209ENST00000553949 NUP85Q9BW27 656 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 KCNF1Q9H3M0 494 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 SMOC2Q9H3U7 446 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 TRPV4Q9HBA0 871 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 TDP1Q9NUW8 608 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 SMPD4Q9NXE4 827 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 RRN3Q9NYV6 651 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 SFMBT1Q9UHJ3 866 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 STAP1Q9ULZ2 295 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 CCL26Q9Y258 94 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 CPQQ9Y646 472 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 C5orf42Q9H799 3197 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 DOCK6Q96HP0 2047 aa12.78□□□□□ -0.36
SHMT2-209ENST00000553949 SLC12A8A0AV02 714 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 TMEM191CA6NGB0 347 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 MSI1O43347 362 aaKnown RBP12.77□□□□□ -0.37
SHMT2-209ENST00000553949 TRUB2O95900 331 aaKnown RBP12.77□□□□□ -0.37
SHMT2-209ENST00000553949 IGLV3-25P01717 112 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 GPD1P21695 349 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 FCARP24071 287 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 SDC4P31431 198 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 VIPR2P41587 438 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 SULT1E1P49888 294 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 PITX1P78337 314 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-209ENST00000553949 ZXDBP98169 803 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 SLC25A52Q3SY17 297 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 CCDC14Q49A88 953 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 ZDHHC14Q8IZN3 488 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 ST13P5Q8NFI4 369 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-209ENST00000553949 ADAM32Q8TC27 787 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 NT5C3BQ969T7 300 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 RSPRY1Q96DX4 576 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 CFAP57Q96MR6 1250 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 ZNF830Q96NB3 372 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-209ENST00000553949 NPY6RQ99463 290 aa12.77□□□□□ -0.37
SHMT2-209ENST00000553949 KLF16Q9BXK1 252 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms