RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CELF3Q5SZQ8 465 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PPP1R26Q5T8A7 1209 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MROH9Q5TGP6 573 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TTC39BQ5VTQ0 682 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 UNC5AQ6ZN44 842 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF534Q76KX8 674 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ARID3BQ8IVW6 561 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CLEC4CQ8WTT0 213 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 KHSRPQ92945 711 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CLPTM1LQ96KA5 538 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PGLYRP2Q96PD5 576 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SGIP1Q9BQI5 828 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SNRNP25Q9BV90 132 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MIS12Q9H081 205 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 IQCGQ9H095 443 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PDZD7Q9H5P4 517 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PCDH18Q9HCL0 1135 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 NMRK1Q9NWW6 199 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 NUP205Q92621 2012 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 H3BRJ5 948 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 FZD9O00144 591 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TBX10O75333 385 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 IL18RAPO95256 599 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ENO1P06733 434 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 LINGO3P0C6S8 592 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TGFB3P10600 412 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 VDRP11473 427 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ESRRAP11474 423 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ARF4P18085 180 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 OSBPP22059 807 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 AMPD1P23109 780 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ADORA2AP29274 412 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PEX19P40855 299 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CRADDP78560 199 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TMPRSS15P98073 1019 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TFDP2Q14188 446 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 RCN2Q14257 317 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CHI3L2Q15782 390 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 AMHR2Q16671 573 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 GOLGA7BQ2TAP0 167 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SH3D19Q5HYK7 790 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 SPDYAQ5MJ70 313 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 WDR78Q5VTH9 848 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 CAPRIN2Q6IMN6 1127 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 ACOT1Q86TX2 421 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 TTC30AQ86WT1 665 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 APOBEC3FQ8IUX4 373 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 VPS52Q8N1B4 723 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MCUR1Q96AQ8 359 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MRPL45Q9BRJ2 306 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 DCLRE1BQ9H816 532 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 GBA2Q9HCG7 927 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MTO1Q9Y2Z2 717 aaKnown RBP7.78□□□□□ -1.16
LIMA1-213ENST00000552720 PLLPQ9Y342 182 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 MAD1L1Q9Y6D9 718 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 WASF2Q9Y6W5 498 aa7.78□□□□□ -1.16
LIMA1-213ENST00000552720 DPPA5A6NC42 116 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 APOL1O14791 398 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CAPN9O14815 690 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 IRF6O14896 467 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 DNAJC6O75061 913 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CNMDO75829 334 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 C22orf31O95567 290 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 F7P08709 466 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SNRPAP09012 282 aaKnown RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ATP6V1C1P21283 382 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 MNX1P50219 401 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 CCNHP51946 323 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 HDAC4P56524 1084 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 KDSRQ06136 332 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 ACAP1Q15027 740 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 MUM1Q2TAK8 710 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 NBPF20Q3BBV1 942 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 C16orf46Q6P387 395 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 OLFML1Q6UWY5 402 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 EP400NLQ6ZTU2 488 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PPP1R13LQ8WUF5 828 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 UCMAQ8WVF2 138 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 DNAJC9Q8WXX5 260 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 E2F7Q96AV8 911 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 MMP19Q99542 508 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 EBF4Q9BQW3 602 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PNPLA8Q9NP80 782 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 IL1RAPL1Q9NZN1 696 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PAK5Q9P286 719 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PPARGC1AQ9UBK2 798 aaKnown RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 BARX2Q9UMQ3 279 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 BRCA2P51587 3418 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SPDYE5A6NIY4 337 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 B2RBV5 119 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 SMAPO00193 183 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PAPSS1O43252 624 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 LYPLA1O75608 230 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 TGDSO95455 350 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 PSMG1O95456 288 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 APOEP02649 317 aa7.77□□□□□ -1.17
LIMA1-213ENST00000552720 TXNP10599 105 aaKnown RBP7.77□□□□□ -1.17
LIMA1-213ENST00000552720 INSRRP14616 1297 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms