RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 MED19A0JLT2 244 aaPredicted RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 PPP1R3GB7ZBB8 358 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 TULP2O00295 520 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 HMBSP08397 361 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 TYRP14679 529 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 TBXAS1P24557 533 aaPredicted RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 GBP1P32455 592 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 TKTL1P51854 596 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 BCAT1P54687 386 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 PDE4CQ08493 712 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 EFEMP1Q12805 493 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 MORC3Q14149 939 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 ELF2Q15723 593 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 HSF5Q4G112 596 aaPredicted RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 PREPLQ4J6C6 727 aaPredicted RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 USP39Q53GS9 565 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 RAB41Q5JT25 222 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 EOGTQ5NDL2 527 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 C10orf76Q5T2E6 689 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 GRAMD4Q6IC98 578 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 RASSF3Q86WH2 238 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 TERB1Q8NA31 727 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 NETO1Q8TDF5 533 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 BHMTQ93088 406 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 ZC3H10Q96K80 434 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 CNOT6LQ96LI5 555 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 XPO6Q96QU8 1125 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 CDK5RAP1Q96SZ6 601 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 UBXN6Q9BZV1 441 aa17.16■□□□□ 0.34
VPS29-207ENST00000549970 DUSP15Q9H1R2 295 aaPredicted RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 DNAJC17Q9NVM6 304 aaKnown RBP17.16■□□□□ 0.34
VPS29-207ENST00000549970 BICDL2A1A5D9 508 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 DCDC2BA2VCK2 349 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 GDF9O60383 454 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ADAM23O75077 832 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 STC2O76061 302 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ALDH1A2O94788 518 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 STX17P56962 302 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 SF3A2Q15428 464 aaKnown RBP17.15■□□□□ 0.34
VPS29-207ENST00000549970 Q6ZNB5 142 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 RSRC2Q7L4I2 434 aaKnown RBP17.15■□□□□ 0.34
VPS29-207ENST00000549970 ARHGAP18Q8N392 663 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ZNF276Q8N554 614 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 UBR7Q8N806 425 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ZNF513Q8N8E2 541 aaPredicted RBP17.15■□□□□ 0.34
VPS29-207ENST00000549970 NT5C1BQ96P26 610 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 RTKNQ9BST9 563 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ULBP1Q9BZM6 244 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 SMOC1Q9H4F8 434 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 POLMQ9NP87 494 aaPredicted RBP17.15■□□□□ 0.34
VPS29-207ENST00000549970 WDR35Q9P2L0 1181 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 HESX1Q9UBX0 185 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 ABCA7Q8IZY2 2146 aa17.15■□□□□ 0.34
VPS29-207ENST00000549970 LAMA1P25391 3075 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 XPO1O14980 1071 aaKnown RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 CACNG3O60359 315 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 RHOBTB1O94844 696 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 MPLP40238 635 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 YWHAGP61981 247 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS29-207ENST00000549970 BST2Q10589 180 aaKnown RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 AASDHQ4L235 1098 aaPredicted RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 TMEM270Q6UE05 265 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 NUDT18Q6ZVK8 323 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 PPM1KQ8N3J5 372 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 C12orf50Q8NA57 414 aaPredicted RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 UBA3Q8TBC4 463 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 NDRG1Q92597 394 aaKnown RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 LRRC4Q9HBW1 653 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 PLK2Q9NYY3 685 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 MARK1Q9P0L2 795 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 BCCIPQ9P287 314 aaKnown RBP eCLIP17.14■□□□□ 0.33
VPS29-207ENST00000549970 CIZ1Q9ULV3 898 aaPredicted RBP17.14■□□□□ 0.33
VPS29-207ENST00000549970 PCDHGA5Q9Y5G8 931 aa17.14■□□□□ 0.33
VPS29-207ENST00000549970 FOXD2O60548 495 aaPredicted RBP17.13■□□□□ 0.33
VPS29-207ENST00000549970 ZBED1O96006 694 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 KLKB1P03952 638 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 ZNF806P0C7X5 589 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 VDRP11473 427 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 BCKDHBP21953 392 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 CORO1AP31146 461 aaKnown RBP17.13■□□□□ 0.33
VPS29-207ENST00000549970 COG7P83436 770 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 CREB5Q02930 508 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 ADIGQ0VDE8 80 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 CETN1Q12798 172 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 PAK1Q13153 545 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 TOGARAM2Q6ZUX3 1019 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 TRMT11Q7Z4G4 463 aaKnown RBP17.13■□□□□ 0.33
VPS29-207ENST00000549970 HMGB4Q8WW32 186 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 KAT5Q92993 513 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 IPO9Q96P70 1041 aaKnown RBP17.13■□□□□ 0.33
VPS29-207ENST00000549970 MARCH2Q9P0N8 246 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 PCDHB4Q9Y5E5 795 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 THADAQ6YHU6 1953 aa17.13■□□□□ 0.33
VPS29-207ENST00000549970 TCRBV21S2A2A0A5A6 115 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 SLC12A8A0AV02 714 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 O00370 1275 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 SLC30A4O14863 429 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 PMM2O15305 246 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 WASP42768 502 aa17.12■□□□□ 0.33
VPS29-207ENST00000549970 EGFLAMQ63HQ2 1017 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms