RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 THAP2Q9H0W7 228 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 LUC7LQ9NQ29 371 aaKnown RBP17.91■□□□□ 0.46
LIG1-204ENST00000542460 METTL5Q9NRN9 209 aaKnown RBP17.91■□□□□ 0.46
LIG1-204ENST00000542460 EPS15L1Q9UBC2 864 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 DNMT3LQ9UJW3 386 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 NUDT5Q9UKK9 219 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 NAALADL1Q9UQQ1 740 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 TCRBV5S1A1TA0A578 114 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 DAB1O75553 588 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 MAGEA1P43355 309 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 SLC7A9P82251 487 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 MAMLD1Q13495 774 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 DCAF6Q58WW2 860 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 SYPL2Q5VXT5 272 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 ARID3BQ8IVW6 561 aaPredicted RBP17.9■□□□□ 0.46
LIG1-204ENST00000542460 DEFB106AQ8N104 65 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 PLCD3Q8N3E9 789 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 TDRD5Q8NAT2 981 aaKnown RBP17.9■□□□□ 0.46
LIG1-204ENST00000542460 CTNNBL1Q8WYA6 563 aaPredicted RBP17.9■□□□□ 0.46
LIG1-204ENST00000542460 SMARCD2Q92925 531 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 RPGRIP1Q96KN7 1286 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 ASB16Q96NS5 453 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 PPP1R9BQ96SB3 815 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 MRPL47Q9HD33 250 aaKnown RBP17.9■□□□□ 0.46
LIG1-204ENST00000542460 INTUQ9ULD6 942 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 SCINQ9Y6U3 715 aa17.9■□□□□ 0.46
LIG1-204ENST00000542460 DOCK6Q96HP0 2047 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 ZNF638Q14966 1978 aaKnown RBP17.89■□□□□ 0.45
LIG1-204ENST00000542460 ARHGAP6O43182 974 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 ATMINO43313 823 aaPredicted RBP17.89■□□□□ 0.45
LIG1-204ENST00000542460 MBL2P11226 248 aaPredicted RBP17.89■□□□□ 0.45
LIG1-204ENST00000542460 SP100P23497 879 aaPredicted RBP17.89■□□□□ 0.45
LIG1-204ENST00000542460 NOS2P35228 1153 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 MATKP42679 507 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 EFEMP1Q12805 493 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 FAM78AQ5JUQ0 283 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 PPP1R15BQ5SWA1 713 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 MSANTD2Q6P1R3 559 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 DCUN1D2Q6PH85 259 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 PACSIN1Q9BY11 444 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 TRPV4Q9HBA0 871 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 TDP1Q9NUW8 608 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 RRN3Q9NYV6 651 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.89■□□□□ 0.45
LIG1-204ENST00000542460 MYO1AQ9UBC5 1043 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 PRKAG3Q9UGI9 489 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 PCDHA13Q9Y5I0 950 aa17.89■□□□□ 0.45
LIG1-204ENST00000542460 C2CD4DB7Z1M9 353 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 CYP1A2P05177 515 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 TMEM253P0C7T8 217 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 RFC1P35251 1148 aaPredicted RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 FLT3P36888 993 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 KRT83P78385 493 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 ADAMTS19Q8TE59 1207 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 DDX23Q9BUQ8 820 aaKnown RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 MARCH2Q9P0N8 246 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 STAP1Q9ULZ2 295 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 ARHGAP26Q9UNA1 814 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 TCF20Q9UGU0 1960 aaKnown RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 MDM4O15151 490 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 GJB6O95452 261 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 COG7P83436 770 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 CCZ1BP86790 482 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 CCZ1P86791 482 aaPredicted RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 MIB1Q86YT6 1006 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 ADHFE1Q8IWW8 467 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 ZDHHC14Q8IZN3 488 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 CELF5Q8N6W0 485 aaKnown RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 EMC1Q8N766 993 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 JOSD2Q8TAC2 188 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 DQX1Q8TE96 717 aaKnown RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 USP13Q92995 863 aaPredicted RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 E2F7Q96AV8 911 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 MCEEQ96PE7 176 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 SMG9Q9H0W8 520 aaKnown RBP17.88■□□□□ 0.45
LIG1-204ENST00000542460 SMOC2Q9H3U7 446 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 KIF9Q9HAQ2 790 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 ZFP14Q9HCL3 533 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 RASAL2Q9UJF2 1139 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 CPQQ9Y646 472 aa17.88■□□□□ 0.45
LIG1-204ENST00000542460 MYO16Q9Y6X6 1858 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 TMEM191CA6NGB0 347 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 C2CD4BA6NLJ0 364 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 DPYSL4O14531 572 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 PRAMEF12O95522 483 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 BMP1P13497 986 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 PDGFRAP16234 1089 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 DEKP35659 375 aaKnown RBP17.87■□□□□ 0.45
LIG1-204ENST00000542460 KPNA1P52294 538 aaPredicted RBP17.87■□□□□ 0.45
LIG1-204ENST00000542460 RPL7AP62424 266 aaKnown RBP17.87■□□□□ 0.45
LIG1-204ENST00000542460 SLC25A52Q3SY17 297 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 MTSS1LQ765P7 747 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 RXFP2Q8WXD0 754 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 NT5C3BQ969T7 300 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 ARHGEF26Q96DR7 871 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 SERPINB11Q96P15 392 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 KLF16Q9BXK1 252 aaPredicted RBP17.87■□□□□ 0.45
LIG1-204ENST00000542460 SMPD4Q9NXE4 827 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 SFMBT1Q9UHJ3 866 aa17.87■□□□□ 0.45
LIG1-204ENST00000542460 CCL26Q9Y258 94 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms