RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 RRM1P23921 792 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 DDX6P26196 483 aaKnown RBP eCLIP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 FLT3P36888 993 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 USP4Q13107 963 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 ZNF77Q15935 545 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 TDRD12Q587J7 1177 aaKnown RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 TJAP1Q5JTD0 557 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 HECTD3Q5T447 861 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 ARTNQ5T4W7 220 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 OR6B2Q6IFH4 312 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 MSANTD2Q6P1R3 559 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 RAD9BQ6WBX8 426 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 BNIPLQ7Z465 357 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 PACSIN1Q9BY11 444 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 NHEJ1Q9H9Q4 299 aaPredicted RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 KCNK12Q9HB15 430 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 SPTLC3Q9NUV7 552 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 SEPT11Q9NVA2 429 aaKnown RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 SFMBT1Q9UHJ3 866 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 ARHGAP26Q9UNA1 814 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 REXO2Q9Y3B8 237 aaKnown RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 CPQQ9Y646 472 aa13.6□□□□□ -0.23
CCDC42-202ENST00000539522 EPN1Q9Y6I3 576 aaPredicted RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 ZFP37Q9Y6Q3 630 aaPredicted RBP13.6□□□□□ -0.23
CCDC42-202ENST00000539522 TRAV19A0A0A6YYK7 116 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 SOWAHDA6NJG2 315 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 HEPACAM2A8MVW5 462 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 I6L893 689 aaPredicted RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ARNTLO00327 626 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 SCAMP3O14828 347 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ZSCAN12O43309 604 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 MSI1O43347 362 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 NARSO43776 548 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ZNF500O60304 480 aaPredicted RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 FTLP02792 175 aaPredicted RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 KLKB1P03952 638 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 TCF3P15923 654 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 NSFP46459 744 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 PSEN1P49768 467 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 OGDHQ02218 1023 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 C1QBPQ07021 282 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ZNF268Q14587 947 aaPredicted RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 SLC18A3Q16572 532 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ARHGAP15Q53QZ3 475 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 KLHDC10Q6PID8 442 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 BEND5Q7L4P6 421 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 DEFB106AQ8N104 65 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 EMC1Q8N766 993 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ADAM32Q8TC27 787 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 DQX1Q8TE96 717 aaKnown RBP13.59□□□□□ -0.23
CCDC42-202ENST00000539522 NT5C3BQ969T7 300 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ELSPBP1Q96BH3 223 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ARHGEF26Q96DR7 871 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 CCDC42Q96M95 316 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 GCNAQ96QF7 691 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 TRIM7Q9C029 511 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ANLNQ9NQW6 1124 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ABCC13Q9NSE7 274 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 TDP1Q9NUW8 608 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ASNSD1Q9NWL6 643 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 SMPD4Q9NXE4 827 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 ADAM22Q9P0K1 906 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 NR2E1Q9Y466 385 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 CEP83Q9Y592 693 aa13.59□□□□□ -0.23
CCDC42-202ENST00000539522 SHISA7A6NL88 538 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 GOLGA8SH3BPF8 625 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 LEFTY2O00292 366 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 RTN2O75298 545 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 ECI2O75521 394 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 DAB1O75553 588 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 LCA5LO95447 670 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 IGLV3-27P01718 113 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 CKMP06732 381 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 PFKLP17858 780 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 CYLC1P35663 651 aaPredicted RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 SCNN1AP37088 669 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 RPL7AP62424 266 aaKnown RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 YWHAZP63104 245 aaKnown RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 ZNF252P-AS1Q0IIN9 211 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 FCHO2Q0JRZ9 810 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 EFEMP1Q12805 493 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 GRM2Q14416 872 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 FAM102AQ5T9C2 384 aaPredicted RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 SH3PXD2AQ5TCZ1 1133 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 PLEKHA7Q6IQ23 1121 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 TAC4Q86UU9 113 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 RNF135Q8IUD6 432 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 SLC44A3Q8N4M1 653 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 SH3RF2Q8TEC5 729 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 ACSF2Q96CM8 615 aaPredicted RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 CHFRQ96EP1 664 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 ZFYVE19Q96K21 471 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 NOX5Q96PH1 765 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 NPY6RQ99463 290 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 THAP2Q9H0W7 228 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 SLITRK6Q9H5Y7 841 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 POPDC2Q9HBU9 364 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 METTL5Q9NRN9 209 aaKnown RBP13.58□□□□□ -0.24
CCDC42-202ENST00000539522 TFR2Q9UP52 801 aa13.58□□□□□ -0.24
CCDC42-202ENST00000539522 FAM50BQ9Y247 325 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms