RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ZNF394Q53GI3 561 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 TRIM61Q5EBN2 209 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 PPP1R26Q5T8A7 1209 aaPredicted RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 DAB2IPQ5VWQ8 1189 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 GRAMD4Q6IC98 578 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 KIAA1211LQ6NV74 962 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 KLHDC10Q6PID8 442 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 Q6ZNB5 142 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 NUDT18Q6ZVK8 323 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 TRMT11Q7Z4G4 463 aaKnown RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 GUF1Q8N442 669 aaKnown RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 DEFB119Q8N690 84 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 CCDC47Q96A33 483 aaKnown RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 ERLEC1Q96DZ1 483 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 EEF2KMTQ96G04 330 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 SPACA7Q96KW9 195 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 XPO6Q96QU8 1125 aaKnown RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 DUSP16Q9BY84 665 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 IMPG2Q9BZV3 1241 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 NIF3L1Q9GZT8 377 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 TMEM8AQ9HCN3 771 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 CD248Q9HCU0 757 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 PNPLA8Q9NP80 782 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 TMEM9BQ9NQ34 198 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 MARK1Q9P0L2 795 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 WDR35Q9P2L0 1181 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 EVLQ9UI08 416 aaPredicted RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 DNMT3LQ9UJW3 386 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 NAGPAQ9UK23 515 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 LSM7Q9UK45 103 aaKnown RBP8.91□□□□□ -0.98
USP28-203ENST00000537490 PCDHA5Q9Y5H7 936 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 USP3Q9Y6I4 520 aa8.91□□□□□ -0.98
USP28-203ENST00000537490 ATXN2Q99700 1313 aaKnown RBP8.9□□□□□ -0.98
USP28-203ENST00000537490 A0A1W2PQ27 194 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 A0A1W2PQ64 194 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 A0A1W2PQD8 194 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 STC2O76061 302 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 ZNF202O95125 648 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 KLKB1P03952 638 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 ITPKAP23677 461 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 RPL13P26373 211 aaKnown RBP8.9□□□□□ -0.98
USP28-203ENST00000537490 ENPEPQ07075 957 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 UAP1L1Q3KQV9 507 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 C10orf120Q5SQS8 335 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 SH3PXD2AQ5TCZ1 1133 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 LYSMD4Q5XG99 296 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 KRT39Q6A163 491 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 CCDC186Q7Z3E2 898 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 SYT12Q8IV01 421 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 SMYD4Q8IYR2 804 aaPredicted RBP8.9□□□□□ -0.98
USP28-203ENST00000537490 CHPFQ8IZ52 775 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 ZNF276Q8N554 614 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 IPO4Q8TEX9 1081 aaKnown RBP8.9□□□□□ -0.98
USP28-203ENST00000537490 TATDN2Q93075 761 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 BHMTQ93088 406 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 HEXIM2Q96MH2 286 aaKnown RBP8.9□□□□□ -0.98
USP28-203ENST00000537490 GDPD2Q9HCC8 539 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 FSCN3Q9NQT6 498 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 PLK2Q9NYY3 685 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 CALCOCO1Q9P1Z2 691 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 FBXO10Q9UK96 956 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 PILRBQ9UKJ0 227 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 RAD54BQ9Y620 910 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 GON4LQ3T8J9 2241 aa8.9□□□□□ -0.98
USP28-203ENST00000537490 MYO18AQ92614 2054 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 IGHV1OR15-9A0A0B4J2B8 117 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 WASH3PC4AMC7 463 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 TOP3BO95985 862 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 HMBSP08397 361 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 RALAP11233 206 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 ENGP17813 658 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 NDUFV2P19404 249 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 TRIM21P19474 475 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 CSRP1P21291 193 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 GTF2H1P32780 548 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 MAPK8P45983 427 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 DGKGP49619 791 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 PSEN1P49768 467 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 RAD23BP54727 409 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 RPL6Q02878 288 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 GOLGA8FQ08AF8 430 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 GOLGA8DPQ0D2H9 430 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 LMAN2Q12907 356 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 SPDYCQ5MJ68 293 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 PEAR1Q5VY43 1037 aaPredicted RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 SDE2Q6IQ49 451 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 SLC23A3Q6PIS1 610 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 PIGZQ86VD9 579 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 SLC41A1Q8IVJ1 513 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 SLC4A11Q8NBS3 891 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 CCDC150Q8NCX0 1101 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 DEFB124Q8NES8 71 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 SPDYE1Q8NFV5 336 aaPredicted RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 TMEM176AQ96HP8 235 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 ARID3AQ99856 593 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 GABRG3Q99928 467 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 NUSAP1Q9BXS6 441 aaKnown RBP8.89□□□□□ -0.99
USP28-203ENST00000537490 SLC6A17Q9H1V8 727 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 CD93Q9NPY3 652 aa8.89□□□□□ -0.99
USP28-203ENST00000537490 CISHQ9NSE2 258 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms