RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NDRG2Q9UN36 371 aaKnown RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 DMDP11532 3685 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 HELZP42694 1942 aaKnown RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 A0A1B0GTH6 734 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 E5RJQ4 531 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 PIK3R2O00459 728 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 NCAM2O15394 837 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 LTFP02788 710 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 OPRD1P41143 372 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 GALK1P51570 392 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 POLR2FP61218 127 aaKnown RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 COG7P83436 770 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 GAS6Q14393 721 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 PON2Q15165 354 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 TRIP4Q15650 581 aaPredicted RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 BTBD8Q5XKL5 378 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 FSTL4Q6MZW2 842 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 MSANTD2Q6P1R3 559 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 NOP9Q86U38 636 aaKnown RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 LUZP1Q86V48 1076 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 MIB1Q86YT6 1006 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 EPS8L1Q8TE68 723 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 EDEM1Q92611 657 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 EZH1Q92800 747 aaPredicted RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 P2RY11Q96G91 374 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 NAP1L5Q96NT1 182 aaPredicted RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 CPXM1Q96SM3 734 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 NACA2Q9H009 215 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 CHRDQ9H2X0 955 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 LMAN1LQ9HAT1 526 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 OLA1Q9NTK5 396 aaKnown RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 MARCH2Q9P0N8 246 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 TJP2Q9UDY2 1190 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 NOCTQ9UK39 431 aaKnown RBP13.59□□□□□ -0.23
VPS28-216ENST00000533806 SH3BP1Q9Y3L3 701 aa13.59□□□□□ -0.23
VPS28-216ENST00000533806 IRF1P10914 325 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 KRT9P35527 623 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 SOX5P35711 763 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 AMPD2Q01433 879 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 EFEMP1Q12805 493 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 NR1H3Q13133 447 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 NR1I3Q14994 352 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 NFKBIBQ15653 356 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 DGKKQ5KSL6 1271 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 TMEM25Q86YD3 366 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 PASD1Q8IV76 773 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 C1orf210Q8IVY1 113 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 PIWIL1Q96J94 861 aaKnown RBP13.58□□□□□ -0.24
VPS28-216ENST00000533806 MIS12Q9H081 205 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 RBM12Q9NTZ6 932 aaKnown RBP13.58□□□□□ -0.24
VPS28-216ENST00000533806 MYO15AQ9UKN7 3530 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 VPS13AQ96RL7 3174 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 MYH10P35580 1976 aa13.58□□□□□ -0.24
VPS28-216ENST00000533806 WDR87Q6ZQQ6 2873 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 A0A0A0MRY4 1105 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 A0A1W2PQC6 194 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 GFRA2O00451 464 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 HOXC11O43248 304 aaPredicted RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 SART1O43290 800 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 IGLV3-27P01718 113 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 CHRM1P11229 460 aaPredicted RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 CHRNB2P17787 502 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 EIF2DP41214 584 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 MESP2Q0VG99 397 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 MTAPQ13126 283 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 EIF4EBP2Q13542 120 aaPredicted RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 PTPN20Q4JDL3 420 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 LY6G5CQ5SRR4 150 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 RSRC2Q7L4I2 434 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 ETFBKMTQ8IXQ9 262 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 FAM217AQ8IXS0 508 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 PHTF2Q8N3S3 785 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 SYNPOQ8N3V7 929 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 C1orf131Q8NDD1 294 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 NEK11Q8NG66 645 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 PPP1R13BQ96KQ4 1090 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 P2RY13Q9BPV8 354 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 IER2Q9BTL4 223 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 NLRC4Q9NPP4 1024 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 SPHK2Q9NRA0 654 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 ST7Q9NRC1 585 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 MARK1Q9P0L2 795 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 SFMBT1Q9UHJ3 866 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 RASAL2Q9UJF2 1139 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 STOML2Q9UJZ1 356 aa13.57□□□□□ -0.24
VPS28-216ENST00000533806 AGO1Q9UL18 857 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 HBS1LQ9Y450 684 aaKnown RBP13.57□□□□□ -0.24
VPS28-216ENST00000533806 SLC12A8A0AV02 714 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 GFPT2O94808 682 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 LSM8O95777 96 aaKnown RBP13.56□□□□□ -0.24
VPS28-216ENST00000533806 ADH1CP00326 375 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 ERBB2P04626 1255 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 GLI1P08151 1106 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 ADH5P11766 374 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 DRD1P21728 446 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 PBX1P40424 430 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 STAT1P42224 750 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 GABRB2P47870 512 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 SLC6A11P48066 632 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 PTPN5P54829 565 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms