RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LSM7Q9UK45 103 aaKnown RBP11.97□□□□□ -0.49
VPS28-214ENST00000531032 FRYQ5TBA9 3013 aa11.97□□□□□ -0.49
VPS28-214ENST00000531032 CEP192Q8TEP8 1941 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 A0A1W2PQH9 124 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 AP5Z1O43299 807 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 PRR29P0C7W0 189 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 CEACAM1P13688 526 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 GCLMP48507 274 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 NDUFA8P51970 172 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 KIF11P52732 1056 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 KRT85P78386 507 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 ZNF252P-AS1Q0IIN9 211 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 DPYDQ12882 1025 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 ZCWPW2Q504Y3 356 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 EGFLAMQ63HQ2 1017 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 SLC23A3Q6PIS1 610 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 TPGS1Q6ZTW0 290 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 ARMCX6Q7L4S7 300 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 CCDC186Q7Z3E2 898 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 FAM186BQ8IYM0 893 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 PGBD3Q8N328 593 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 GUF1Q8N442 669 aaKnown RBP11.96□□□□□ -0.49
VPS28-214ENST00000531032 ZNF276Q8N554 614 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 CCDC47Q96A33 483 aaKnown RBP11.96□□□□□ -0.49
VPS28-214ENST00000531032 JAKMIP2Q96AA8 810 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 XPO6Q96QU8 1125 aaKnown RBP11.96□□□□□ -0.49
VPS28-214ENST00000531032 GABRG3Q99928 467 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 NUSAP1Q9BXS6 441 aaKnown RBP11.96□□□□□ -0.49
VPS28-214ENST00000531032 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.96□□□□□ -0.491e-6■■■■■ 37.9
VPS28-214ENST00000531032 CALCOCO1Q9P1Z2 691 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 WDR35Q9P2L0 1181 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 DNMT3LQ9UJW3 386 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 PILRBQ9UKJ0 227 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 WASF3Q9UPY6 502 aa11.96□□□□□ -0.49
VPS28-214ENST00000531032 ASCC3Q8N3C0 2202 aaKnown RBP11.95□□□□□ -0.5
VPS28-214ENST00000531032 PI4KAP42356 2102 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 ATXN2Q99700 1313 aaKnown RBP11.95□□□□□ -0.5
VPS28-214ENST00000531032 CFAP47Q6ZTR5 3102 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 PRRT4C9JH25 899 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 MDM4O15151 490 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 STC2O76061 302 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 CISD3P0C7P0 127 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 RARGP13631 454 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 KRT13P13646 458 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 ENGP17813 658 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 CD58P19256 250 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 ITPKAP23677 461 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 RPL13P26373 211 aaKnown RBP11.95□□□□□ -0.5
VPS28-214ENST00000531032 PSMC2P35998 433 aaKnown RBP11.95□□□□□ -0.5
VPS28-214ENST00000531032 PLA2G4AP47712 749 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 PSEN1P49768 467 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 RPL6Q02878 288 aaKnown RBP11.95□□□□□ -0.5
VPS28-214ENST00000531032 KIAA1211LQ6NV74 962 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 SLC36A4Q6YBV0 504 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 TOGARAM2Q6ZUX3 1019 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 SCD5Q86SK9 330 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 CHPFQ8IZ52 775 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 FAXDC2Q96IV6 333 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 ACOX2Q99424 681 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 DUSP16Q9BY84 665 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 TMEM8AQ9HCN3 771 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 NUDT5Q9UKK9 219 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 MAPK8IP1Q9UQF2 711 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 ZDHHC9Q9Y397 364 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 USP3Q9Y6I4 520 aa11.95□□□□□ -0.5
VPS28-214ENST00000531032 PCDH15Q96QU1 1955 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 GON4LQ3T8J9 2241 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 IGHV1OR15-9A0A0B4J2B8 117 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 A0A1W2PQ27 194 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 A0A1W2PQ64 194 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 A0A1W2PQD8 194 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 GFRA2O00451 464 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 ZNF217O75362 1048 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 PENKP01210 267 aaPredicted RBP11.94□□□□□ -0.5
VPS28-214ENST00000531032 NDUFV2P19404 249 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 GTF2H1P32780 548 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 WASP42768 502 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 DGKGP49619 791 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 ADAM9Q13443 819 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 UAP1L1Q3KQV9 507 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 C10orf120Q5SQS8 335 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 PPP1R26Q5T8A7 1209 aaPredicted RBP11.94□□□□□ -0.5
VPS28-214ENST00000531032 KRT39Q6A163 491 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 SDE2Q6IQ49 451 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 KRBA2Q6ZNG9 492 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 TADA2BQ86TJ2 420 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 CCDC150Q8NCX0 1101 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 CEP76Q8TAP6 659 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 IPO4Q8TEX9 1081 aaKnown RBP11.94□□□□□ -0.5
VPS28-214ENST00000531032 P2RY11Q96G91 374 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 CDK5RAP1Q96SZ6 601 aaKnown RBP11.94□□□□□ -0.5
VPS28-214ENST00000531032 DNAI2Q9GZS0 605 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 CLIC5Q9NZA1 410 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 NAGPAQ9UK23 515 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 FBXO10Q9UK96 956 aa11.94□□□□□ -0.5
VPS28-214ENST00000531032 UPK3BL1B0FP48 263 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 UPK3BL2E5RIL1 263 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 ZBTB24O43167 697 aaPredicted RBP11.93□□□□□ -0.5
VPS28-214ENST00000531032 KLKB1P03952 638 aa11.93□□□□□ -0.5
VPS28-214ENST00000531032 PROS1P07225 676 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms