RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 CST3P01034 146 aaPredicted RBP12.31□□□□□ -0.44
SDCBP-211ENST00000523441 HLA-EP13747 358 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 TNNI1P19237 187 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 GARTP22102 1010 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 SLC5A3P53794 718 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 POU5F1Q01860 360 aaKnown RBP12.31□□□□□ -0.44
SDCBP-211ENST00000523441 ORC1Q13415 861 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 CAMK2BQ13554 666 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 SUZ12Q15022 739 aaKnown RBP12.31□□□□□ -0.44
SDCBP-211ENST00000523441 DUOXA2Q1HG44 320 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 KIF19Q2TAC6 998 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 WDR72Q3MJ13 1102 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 IL27RAQ6UWB1 636 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 SCARA5Q6ZMJ2 495 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 USP49Q70CQ1 688 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 BAHD1Q8TBE0 780 aaPredicted RBP12.31□□□□□ -0.44
SDCBP-211ENST00000523441 DNASE2BQ8WZ79 361 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 PRCCQ92733 491 aaPredicted RBP12.31□□□□□ -0.44
SDCBP-211ENST00000523441 CCDC127Q96BQ5 260 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 SIPA1Q96FS4 1042 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 PANK2Q9BZ23 570 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 STARD13Q9Y3M8 1113 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 PCDHB13Q9Y5F0 798 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 MAST4O15021 2626 aa12.31□□□□□ -0.44
SDCBP-211ENST00000523441 PLXNA2O75051 1894 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 KNL1Q8NG31 2342 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 ZNF233A6NK53 670 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 CACNG3O60359 315 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 TLR5O60602 858 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 JUPP14923 745 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 IL12RB1P42701 662 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 CDH8P55286 799 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 SF3A1Q15459 793 aaKnown RBP12.3□□□□□ -0.44
SDCBP-211ENST00000523441 PRAMEF14Q5SWL7 426 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 TRAPPC11Q7Z392 1133 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 ADAT2Q7Z6V5 191 aaKnown RBP12.3□□□□□ -0.44
SDCBP-211ENST00000523441 FAM35AQ86V20 835 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 TMPRSS6Q8IU80 811 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 KIAA1958Q8N8K9 716 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 B3GALNT2Q8NCR0 500 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 HPS3Q969F9 1004 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 CEP295NLQ96MC4 621 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 KIF2CQ99661 725 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 C6orf106Q9H6K1 298 aaPredicted RBP12.3□□□□□ -0.44
SDCBP-211ENST00000523441 ITM2CQ9NQX7 267 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 KRT82Q9NSB4 513 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 WDR35Q9P2L0 1181 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 DKK4Q9UBT3 224 aa12.3□□□□□ -0.44
SDCBP-211ENST00000523441 LSM7Q9UK45 103 aaKnown RBP12.3□□□□□ -0.44
SDCBP-211ENST00000523441 ZNF462Q96JM2 2506 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 METTL12A8MUP2 240 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 ATXN7O15265 892 aaPredicted RBP12.29□□□□□ -0.44
SDCBP-211ENST00000523441 TNFSF14O43557 240 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 TLX3O43711 291 aaPredicted RBP12.29□□□□□ -0.44
SDCBP-211ENST00000523441 AP1G2O75843 785 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 EPHX1P07099 455 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 HMBSP08397 361 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 CCDC130P13994 396 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 GAP43P17677 238 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 LONP1P36776 959 aaKnown RBP12.29□□□□□ -0.44
SDCBP-211ENST00000523441 TRPC3Q13507 836 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 LIMS2Q7Z4I7 341 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 GATAD2AQ86YP4 633 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 ZNF843Q8N446 348 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 ZNF366Q8N895 744 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 SORCS1Q8WY21 1168 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 STRA6Q9BX79 667 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 CIPCQ9C0C6 399 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 SMYD3Q9H7B4 428 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 USP36Q9P275 1121 aaKnown RBP12.29□□□□□ -0.44
SDCBP-211ENST00000523441 FTSJ1Q9UET6 329 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 ANKRD6Q9Y2G4 727 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 KIF3AQ9Y496 699 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 ATP8B3O60423 1300 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 CFAP46Q8IYW2 2715 aa12.29□□□□□ -0.44
SDCBP-211ENST00000523441 H0Y8X5 98 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 RRP8O43159 456 aaKnown RBP12.28□□□□□ -0.44
SDCBP-211ENST00000523441 SLC26A4O43511 780 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 PHACTR2O75167 634 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 FSBPO95073 299 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 CISD3P0C7P0 127 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 ZNF883P0CG24 379 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 GJB2P29033 226 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 GRK6P43250 576 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 AFF3P51826 1226 aaKnown RBP12.28□□□□□ -0.44
SDCBP-211ENST00000523441 MAP3K7CLP57077 242 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 MYL6P60660 151 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 CXADRP78310 365 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 ARID5AQ03989 594 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 GOLGA8FQ08AF8 430 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 GOLGA8DPQ0D2H9 430 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 CCDC173Q0VFZ6 552 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 DNAJC3Q13217 504 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 TEAD4Q15561 434 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 GEN1Q17RS7 908 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 RRAGBQ5VZM2 374 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 HTR3DQ70Z44 454 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 SV2BQ7L1I2 683 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 ACOT1Q86TX2 421 aa12.28□□□□□ -0.44
SDCBP-211ENST00000523441 CADM4Q8NFZ8 388 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms