RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ATICP31939 592 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 HUNKP57058 714 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 DPYSL3Q14195 570 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 CSHL1Q14406 222 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 CRYMQ14894 314 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 AGAP9Q5VTM2 703 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 TDRD10Q5VZ19 366 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 DCP1BQ8IZD4 617 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 MSL3Q8N5Y2 521 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 PORCNQ9H237 461 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 LZTS1Q9Y250 596 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 MAGEA13PA6NCF6 341 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 HIST1H2AGP0C0S8 130 aaPredicted RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 HIST1H2ADP20671 130 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 THPOP40225 353 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 DRG2P55039 364 aaKnown RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 TAS2R40P59535 323 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 ELF3P78545 371 aaPredicted RBP13.06□□□□□ -0.32
USP53-209ENST00000514665 TTC23LQ6PF05 361 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 NPNTQ6UXI9 565 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 SLC16A10Q8TF71 515 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 HIST1H2AHQ96KK5 128 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 HIST1H2AJQ99878 128 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 H2AFJQ9BTM1 129 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 MROH8Q9H579 483 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 VANGL2Q9ULK5 521 aa13.06□□□□□ -0.32
USP53-209ENST00000514665 CASTOR2A6NHX0 329 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 MEI4A8MW99 385 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ZNF197O14709 1029 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 STX7O15400 261 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 CYP1A2P05177 515 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 UBA1P22314 1058 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 CRADDP78560 199 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ZACNQ401N2 412 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 MFN1Q8IWA4 741 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 DEFB106AQ8N104 65 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 SLC2A14Q8TDB8 520 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 HTR3CQ8WXA8 447 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 USP6NLQ92738 828 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 SEMA4DQ92854 862 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 USP13Q92995 863 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 APOPT1Q96IL0 206 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 SLITRK1Q96PX8 696 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 PCDHB18PQ96TA0 734 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 FICDQ9BVA6 458 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 RBM22Q9NW64 420 aaKnown RBP eCLIP13.05□□□□□ -0.32
USP53-209ENST00000514665 NCF1BA6NI72 391 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 TRPC5OSA6NMA1 111 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 NCF1CA8MVU1 366 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 TSPAN3O60637 253 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 PDE5AO76074 875 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 MYO1DO94832 1006 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 NCF1P14598 390 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 DRD4P21917 467 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 GEMP55040 296 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 KCNK10P57789 538 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 YWHAZP63104 245 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 FUT11Q495W5 492 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 BNC2Q6ZN30 1099 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 KREMEN1Q96MU8 473 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ASB7Q9H672 318 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 LRRC19Q9H756 370 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 VAV3Q9UKW4 847 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 UBIAD1Q9Y5Z9 338 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 NCANO14594 1321 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 BTNL10A8MVZ5 291 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 RNF103O00237 685 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ZSCAN9O15535 394 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 RPL22P35268 128 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 TNFSF9P41273 254 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 BMT2Q1RMZ1 405 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 OLFML2BQ68BL8 750 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 COPS5Q92905 334 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ZBTB10Q96DT7 871 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 PHF21BQ96EK2 531 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 OXNAD1Q96HP4 312 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 UTP6Q9NYH9 597 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 C15orf41Q9Y2V0 281 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 C2CD2LO14523 706 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 DDNO94850 711 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 GP5P40197 560 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 POU4F1Q01851 419 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 MTFR1Q15390 333 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 NBPF20Q3BBV1 942 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 TCHHL1Q5QJ38 904 aaPredicted RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 PDPK2PQ6A1A2 396 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 TMPRSS6Q8IU80 811 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 UNC45BQ8IWX7 931 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 ZNF384Q8TF68 577 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 SH3KBP1Q96B97 665 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 DCUN1D1Q96GG9 259 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 TBCBQ99426 244 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 GID8Q9NWU2 228 aa13.05□□□□□ -0.32
USP53-209ENST00000514665 AAR2Q9Y312 384 aaKnown RBP13.05□□□□□ -0.32
USP53-209ENST00000514665 TCRBV7S2A1N4TA0A589 114 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 MYO1GB0I1T2 1018 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 DCXO43602 365 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 FKBP9O95302 570 aa13.04□□□□□ -0.32
USP53-209ENST00000514665 IRX1P78414 480 aaPredicted RBP13.04□□□□□ -0.32
USP53-209ENST00000514665 FKBP9P1Q75LS8 142 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms