RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PRELID2Q8N945 189 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 PDZD8Q8NEN9 1154 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 RNF34Q969K3 372 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 CDK5RAP1Q96SZ6 601 aaKnown RBP16.66■□□□□ 0.26
NUP54-214ENST00000514307 EMILIN2Q9BXX0 1053 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 RAB17Q9H0T7 212 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 WDCPQ9H6R7 721 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 FAM204AQ9H8W3 233 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 OLA1Q9NTK5 396 aaKnown RBP16.66■□□□□ 0.26
NUP54-214ENST00000514307 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.66■□□□□ 0.26
NUP54-214ENST00000514307 CLIC5Q9NZA1 410 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 PCYOX1Q9UHG3 505 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 FBXW11Q9UKB1 542 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 RAB21Q9UL25 225 aa16.66■□□□□ 0.26
NUP54-214ENST00000514307 DRG1Q9Y295 367 aaKnown RBP16.66■□□□□ 0.26
NUP54-214ENST00000514307 UTP11Q9Y3A2 253 aaKnown RBP16.66■□□□□ 0.26
NUP54-214ENST00000514307 FAM92AA1XBS5 289 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 WDR27A2RRH5 827 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 C3orf70A6NLC5 250 aaPredicted RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 SLC38A8A6NNN8 435 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 CSH1P0DML2 217 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 CSH2P0DML3 217 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 SLC2A3P11169 496 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 ADRA1BP35368 520 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 ARL4AP40617 200 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 PPP3CCP48454 512 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 CXCR3P49682 368 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 DR1Q01658 176 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 UBE3AQ05086 875 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 IFRD2Q12894 506 aaPredicted RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 MTA1Q13330 715 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 PLD1Q13393 1074 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 VEPH1Q14D04 833 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 SMTNL2Q2TAL5 461 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 MAP9Q49MG5 647 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 EFHC2Q5JST6 749 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 KAZNQ674X7 775 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 CCDC137Q6PK04 289 aaKnown RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 BBS12Q6ZW61 710 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 TMC7Q7Z402 723 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 BNIPLQ7Z465 357 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 RFX6Q8HWS3 928 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 C12orf50Q8NA57 414 aaPredicted RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 KLHL23Q8NBE8 558 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 FAM71BQ8TC56 605 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.65■□□□□ 0.26
NUP54-214ENST00000514307 OVCA2Q8WZ82 227 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 TSC1Q92574 1164 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 EDEM1Q92611 657 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 FBXO32Q969P5 355 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 NTAN1Q96AB6 310 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 SAMD11Q96NU1 681 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 DDX47Q9H0S4 455 aaKnown RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 ANKZF1Q9H8Y5 726 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 CYP4F11Q9HBI6 524 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 DDIT4Q9NX09 232 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 STIM2Q9P246 746 aa16.65■□□□□ 0.26
NUP54-214ENST00000514307 RCOR3Q9P2K3 495 aaPredicted RBP16.65■□□□□ 0.26
NUP54-214ENST00000514307 PRRG1O14668 218 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 ADAM12O43184 909 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 LILRB3O75022 631 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 KRT10P13645 584 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 RPL17P18621 184 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 L1CAMP32004 1257 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 ARSEP51690 589 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 KPNA1P52294 538 aaPredicted RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 EPHB3P54753 998 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 KLF1Q13351 362 aaPredicted RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 DPYSL2Q16555 572 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 ACBD5Q5T8D3 534 aaPredicted RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 RASIP1Q5U651 963 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 DRICH1Q6PGQ1 229 aaPredicted RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 CCNI2Q6ZMN8 369 aaPredicted RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 BZW1Q7L1Q6 419 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 BHLHA9Q7RTU4 235 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 TCEAL8Q8IYN2 117 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 ZNF276Q8N554 614 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 EIF1ADQ8N9N8 165 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 ANKRD7Q92527 254 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 RNF157Q96PX1 679 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 SNRNP25Q9BV90 132 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 UBE2OQ9C0C9 1292 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 DHX35Q9H5Z1 703 aaKnown RBP16.64■□□□□ 0.25
NUP54-214ENST00000514307 KLHL11Q9NVR0 708 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 AMACRQ9UHK6 382 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 SLC12A6Q9UHW9 1150 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 FZD10Q9ULW2 581 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 AP4E1Q9UPM8 1137 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 NR2E1Q9Y466 385 aa16.64■□□□□ 0.25
NUP54-214ENST00000514307 A0A1W2PQH9 124 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 CCDC151A5D8V7 595 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 H3BRJ5 948 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 CST8O60676 142 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 GAS8O95995 478 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 C1RP00736 705 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 TFE3P19532 575 aaPredicted RBP16.63■□□□□ 0.25
NUP54-214ENST00000514307 CTNNB1P35222 781 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 HCAR3P49019 387 aa16.63■□□□□ 0.25
NUP54-214ENST00000514307 GPR15P49685 360 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms