RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NBPF7P0C2Y1 421 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 ATF7P17544 494 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 TNFSF4P23510 183 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 MST1P26927 711 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 GPC5P78333 572 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 MTAPQ13126 283 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 CC2D1BQ5T0F9 858 aaKnown RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 TMEM63BQ5T3F8 832 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 HIBCHQ6NVY1 386 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 VSTM1Q6UX27 236 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 CCDC28AQ8IWP9 274 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 TXLNBQ8N3L3 684 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 OSR1Q8TAX0 266 aaPredicted RBP6.68□□□□□ -1.34
SF3B1-212ENST00000496458 PARD3BQ8TEW8 1205 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 FAM118BQ9BPY3 351 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 C1QTNF7Q9BXJ2 289 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 PRSS22Q9GZN4 317 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 TMOD4Q9NZQ9 345 aa6.68□□□□□ -1.34
SF3B1-212ENST00000496458 ANO9A1A5B4 782 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 DSCR3O14972 297 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 FYB1O15117 783 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 KCNQ3O43525 872 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 BCAR3O75815 825 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 NDST3O95803 873 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 KRT18P05783 430 aaKnown RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 HARSP12081 509 aaKnown RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 PBX1P40424 430 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 CCDC15Q0P6D6 951 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 DAZAP2Q15038 168 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 ACOX1Q15067 660 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 ETFDHQ16134 617 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 ARL13BQ3SXY8 428 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 MRNIPQ6NTE8 343 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 USP17L6PQ6QN14 398 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 RANBP10Q6VN20 620 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 C1QL2Q7Z5L3 287 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 FAM71DQ8N9W8 422 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 ABHD5Q8WTS1 349 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 RPL36ALQ969Q0 106 aaKnown RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 PRR11Q96HE9 360 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 PCDHAC1Q9H158 963 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 SAP30LQ9HAJ7 183 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 VPS45Q9NRW7 570 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 GAR1Q9NY12 217 aaKnown RBP6.67□□□□□ -1.34
SF3B1-212ENST00000496458 FZD4Q9ULV1 537 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 MAN2B2Q9Y2E5 1009 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 BTBD3Q9Y2F9 522 aa6.67□□□□□ -1.34
SF3B1-212ENST00000496458 CYP2D7A0A087X1C5 515 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 TP73O15350 636 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 PRC1O43663 620 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 IDEP14735 1019 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 SLC14A1Q13336 389 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 SEC23BQ15437 767 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 AASDHQ4L235 1098 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-212ENST00000496458 FAM209BQ5JX69 171 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 RAP1GAP2Q684P5 730 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 KIAA0408Q6ZU52 694 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 KAZALD1Q96I82 304 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 SNX27Q96L92 541 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 RIPOR3Q96MK2 946 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 WDR24Q96S15 920 aa6.66□□□□□ -1.34
SF3B1-212ENST00000496458 CINPQ9BW66 212 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-212ENST00000496458 ZMYND8Q9ULU4 1186 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-212ENST00000496458 RASA4BC9J798 803 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 RASA4O43374 803 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 TMIGD3P0DMS9 266 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-212ENST00000496458 DRD1P21728 446 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 ATP5F1P24539 256 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-212ENST00000496458 GABRB3P28472 473 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 GALNSP34059 522 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 TM4SF4P48230 202 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 TBX4P57082 545 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 DNASE1L3Q13609 305 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.65□□□□□ -1.34
SF3B1-212ENST00000496458 IL31Q6EBC2 164 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 C11orf96Q7Z7L8 435 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 DPP9Q86TI2 863 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 C16orf71Q8IYS4 520 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-212ENST00000496458 ZNF398Q8TD17 642 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 DENND1AQ8TEH3 1009 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 HIC2Q96JB3 615 aa6.65□□□□□ -1.34
SF3B1-212ENST00000496458 FCHO1O14526 889 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 ZSCAN9O15535 394 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-212ENST00000496458 CBFA2T3O75081 653 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 MYL1P05976 194 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 PECAM1P16284 738 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-212ENST00000496458 SLC5A2P31639 672 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 MMP13P45452 471 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 DGKQP52824 942 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 SLC35G1Q2M3R5 365 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 ARHGAP15Q53QZ3 475 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 TMTC4Q5T4D3 741 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 MEX3CQ5U5Q3 659 aaKnown RBP6.64□□□□□ -1.35
SF3B1-212ENST00000496458 ZNF425Q6IV72 752 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 MAP4K1Q92918 833 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 GRAMD1AQ96CP6 724 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 ADGRE3Q9BY15 652 aa6.64□□□□□ -1.35
SF3B1-212ENST00000496458 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.64□□□□□ -1.352e-6■■□□□ 11.5
SF3B1-212ENST00000496458 ARNT2Q9HBZ2 717 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms