RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 NUDT18Q6ZVK8 323 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 RSRC2Q7L4I2 434 aaKnown RBP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 TRMT11Q7Z4G4 463 aaKnown RBP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 MIB1Q86YT6 1006 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 SIX6OS1Q8N1H7 587 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 SCML4Q8N228 414 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 TERB1Q8NA31 727 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 MLKLQ8NB16 471 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 KCNV2Q8TDN2 545 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 KCTD13Q8WZ19 329 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 WBP2Q969T9 261 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 LOXL4Q96JB6 756 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 IPO9Q96P70 1041 aaKnown RBP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 SRRTQ9BXP5 876 aaKnown RBP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 LRRC4Q9HBW1 653 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 OLA1Q9NTK5 396 aaKnown RBP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 WDR35Q9P2L0 1181 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.5■□□□□ 0.23
HDAC4-213ENST00000496347 PCDHB4Q9Y5E5 795 aa16.5■□□□□ 0.23
HDAC4-213ENST00000496347 NEDD8-MDP1E9PL57 170 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 FOXD2O60548 495 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 ID4P47928 161 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 SLC6A11P48066 632 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 PXNP49023 591 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 MESP2Q0VG99 397 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 BHLHA9Q7RTU4 235 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 CACNA2D4Q7Z3S7 1137 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 TMEM25Q86YD3 366 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 FAM160A2Q8N612 972 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 RBBP8NLQ8NC74 664 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 CNOT6LQ96LI5 555 aaKnown RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 BBS2Q9BXC9 721 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 ULBP1Q9BZM6 244 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 DCLK3Q9C098 648 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 INTS2Q9H0H0 1204 aaKnown RBP16.49■□□□□ 0.23
HDAC4-213ENST00000496347 CLSTN2Q9H4D0 955 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 CNGB3Q9NQW8 809 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 MARCH2Q9P0N8 246 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 RASAL2Q9UJF2 1139 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 NUDT5Q9UKK9 219 aa16.49■□□□□ 0.23
HDAC4-213ENST00000496347 NCOR2Q9Y618 2525 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 SPTBN2O15020 2390 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 M0QYV0 167 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 TULP2O00295 520 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 TYRP14679 529 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 HOXC13P31276 330 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 KIR2DL1P43626 348 aaPredicted RBP16.48■□□□□ 0.23
HDAC4-213ENST00000496347 EFEMP1Q12805 493 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 CRY1Q16526 586 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 MEA1Q16626 185 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 EOGTQ5NDL2 527 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 GRAMD4Q6IC98 578 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 ENOSF1Q7L5Y1 443 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 ERMP1Q7Z2K6 904 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 C11orf74Q86VG3 221 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 RASSF3Q86WH2 238 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 SFTPA1Q8IWL2 248 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 IL17RCQ8NAC3 791 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 TFAP2BQ92481 460 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 KAT5Q92993 513 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 PLD4Q96BZ4 506 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 FAM81BQ96LP2 452 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 XPO6Q96QU8 1125 aaKnown RBP16.48■□□□□ 0.23
HDAC4-213ENST00000496347 DNAJC17Q9NVM6 304 aaKnown RBP16.48■□□□□ 0.23
HDAC4-213ENST00000496347 POLR3BQ9NW08 1133 aaPredicted RBP16.48■□□□□ 0.23
HDAC4-213ENST00000496347 USP18Q9UMW8 372 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 CNTN6Q9UQ52 1028 aa16.48■□□□□ 0.23
HDAC4-213ENST00000496347 GTPBP10A4D1E9 387 aaKnown RBP16.47■□□□□ 0.23
HDAC4-213ENST00000496347 TBC1D3BA6NDS4 549 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 PRR5-ARHGAP8B1AHC4 643 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 ALDH1A2O94788 518 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 KLF8O95600 359 aaPredicted RBP16.47■□□□□ 0.23
HDAC4-213ENST00000496347 SDHBP21912 280 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 TGM1P22735 817 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 BRD2P25440 801 aaKnown RBP16.47■□□□□ 0.23
HDAC4-213ENST00000496347 CORO1AP31146 461 aaKnown RBP16.47■□□□□ 0.23
HDAC4-213ENST00000496347 CHKAP35790 457 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 ARHGAP8P85298 464 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 FOXK2Q01167 660 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 CNGA2Q16280 664 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 C10orf76Q5T2E6 689 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 SMYD5Q6GMV2 418 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 CLEC17AQ6ZS10 378 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 RRAGAQ7L523 313 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 ARHGEF19Q8IW93 802 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 ALLCQ8N6M5 410 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 EHBP1Q8NDI1 1231 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 RMDN1Q96DB5 314 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 ZC3H10Q96K80 434 aaKnown RBP16.47■□□□□ 0.23
HDAC4-213ENST00000496347 KREMEN1Q96MU8 473 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 PARD6AQ9NPB6 346 aa16.47■□□□□ 0.23
HDAC4-213ENST00000496347 NUP205Q92621 2012 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 EPN2O95208 641 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 PENKP01210 267 aaPredicted RBP16.46■□□□□ 0.23
HDAC4-213ENST00000496347 SPEM2Q0P670 501 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 ELF2Q15723 593 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 CSRP2Q16527 193 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 ANO7Q6IWH7 933 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 TRIM65Q6PJ69 517 aa16.46■□□□□ 0.23
HDAC4-213ENST00000496347 CCDC33Q8N5R6 958 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms