RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	STAM2	O75886	525 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TOP3B	O95985	862 aa	Known RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CHRNA1	P02708	482 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	POLR2M	P0CAP2	368 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TGFB3	P10600	412 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	GHR	P10912	638 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	MYCL	P12524	364 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ITGB5	P18084	799 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SPINK2	P20155	84 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	BDNF	P23560	247 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	AOAH	P28039	575 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	MC4R	P32245	332 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TEC	P42680	631 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KIR2DL1	P43626	348 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KIR2DL2	P43627	348 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CASP5	P51878	434 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CCT2	P78371	535 aa	Known RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SHC2	P98077	582 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CDK17	Q00537	523 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	PTH1R	Q03431	593 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	GRIN1	Q05586	938 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	PPP3CA	Q08209	521 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	FOXD4	Q12950	439 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ADRM1	Q16186	407 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	DUSP6	Q16828	381 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CCDC178	Q5BJE1	867 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SPECC1	Q5M775	1068 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TTC38	Q5R3I4	469 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	MARCH8	Q5T0T0	291 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KIAA1841	Q6NSI8	718 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KCNV1	Q6PIU1	500 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	APOA5	Q6Q788	366 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CD163	Q86VB7	1156 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	C12orf76	Q8N812	135 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	OR2I1P	Q8NGU4	316 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SHKBP1	Q8TBC3	707 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	PHOSPHO1	Q8TCT1	267 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	LRTOMT	Q8WZ04	291 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SEPT8	Q92599	483 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	APBB2	Q92870	758 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ERCC4	Q92889	916 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ATP6V0A1	Q93050	837 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	RILPL2	Q969X0	211 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KIAA1191	Q96A73	305 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ZBTB10	Q96DT7	871 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	BBC3	Q96PG8	261 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	NAP1L4	Q99733	375 aa	Known RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SPZ1	Q9BXG8	430 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	KRT23	Q9C075	422 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	RNPEP	Q9H4A4	650 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TLE6	Q9H808	572 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	LY9	Q9HBG7	655 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	SETD4	Q9NVD3	440 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	GPRC5B	Q9NZH0	403 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ZNF69	Q9UC07	566 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ZC3H7B	Q9UGR2	993 aa	Known RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TUBE1	Q9UJT0	475 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ZNF215	Q9UL58	517 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	ASB1	Q9Y576	335 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	PCDHA1	Q9Y5I3	950 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CDY2A	Q9Y6F7	541 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	TENM4	Q6N022	2769 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	CFAP46	Q8IYW2	2715 aa		4.77	□□□□□ -1.65
VPS52-222	ENST00000495981	NRCAM	Q92823	1304 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	IGSF9B	Q9UPX0	1349 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	CAPN8	A6NHC0	703 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	HIDE1	A8MVS5	230 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	HIP1	O00291	1037 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	SLC30A4	O14863	429 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	PLEKHA8P1	O95397	391 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TCF7	P36402	384 aa	Predicted RBP	4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	RENBP	P51606	427 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	MAP2K6	P52564	334 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	SLC16A1	P53985	500 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	SLC6A3	Q01959	620 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	DMWD	Q09019	674 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	MALL	Q13021	153 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	PPFIA1	Q13136	1202 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	IL10RA	Q13651	578 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TRIM14	Q14142	442 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	SIM2	Q14190	667 aa	Predicted RBP	4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	RALGPS1	Q5JS13	557 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	DGKK	Q5KSL6	1271 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	FBXO47	Q5MNV8	452 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TTC22	Q5TAA0	569 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TAF2	Q6P1X5	1199 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	LVRN	Q6Q4G3	990 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TMEM184A	Q6ZMB5	413 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	MAEA	Q7L5Y9	396 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	C1orf210	Q8IVY1	113 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	RSAD2	Q8WXG1	361 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	MAP4K1	Q92918	833 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	KAT5	Q92993	513 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TUBGCP5	Q96RT8	1024 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	PCYT2	Q99447	389 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	FOXB1	Q99853	325 aa		4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	TEP1	Q99973	2627 aa	Known RBP	4.76	□□□□□ -1.65
VPS52-222	ENST00000495981	ACE2	Q9BYF1	805 aa	Predicted RBP	4.76	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms