RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PLEKHG6Q3KR16 790 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 GPATCH4Q5T3I0 446 aaKnown RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 ZNF618Q5T7W0 954 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.33□□□□□ -1.246e-10■■■□□ 17.3
VIM-207ENST00000495528 MFSD6Q6ZSS7 791 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 DGKHQ86XP1 1220 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 TBC1D10CQ8IV04 446 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 ADGRF4Q8IZF3 695 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 FBXO18Q8NFZ0 1043 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 NSUN6Q8TEA1 469 aaKnown RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 NRG4Q8WWG1 115 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 TGS1Q96RS0 853 aaKnown RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 RMDN3Q96TC7 470 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 NELFAQ9H3P2 528 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 UBE2ZQ9H832 354 aaPredicted RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 RBM12Q9NTZ6 932 aaKnown RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 SCOCQ9UIL1 159 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 LUC7L2Q9Y383 392 aaKnown RBP7.33□□□□□ -1.24
VIM-207ENST00000495528 SPEF1Q9Y4P9 236 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 BDP1A6H8Y1 2624 aa7.33□□□□□ -1.24
VIM-207ENST00000495528 REV3LO60673 3130 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ABCB11O95342 1321 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 EIF3JO75822 258 aaKnown RBP7.32□□□□□ -1.24
VIM-207ENST00000495528 STC2O76061 302 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 IL9P15248 144 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 KCNA5P22460 613 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 PPP3CAQ08209 521 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 FOXL1Q12952 345 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 KIAA0753Q2KHM9 967 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 QRICH1Q2TAL8 776 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 FAM214AQ32MH5 1076 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 LEXMQ3ZCV2 418 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ODR4Q5SWX8 454 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ARHGEF16Q5VV41 709 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ZNF585AQ6P3V2 769 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 FAM111BQ6SJ93 734 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 CWC27Q6UX04 472 aaKnown RBP7.32□□□□□ -1.24
VIM-207ENST00000495528 DBF4BQ8NFT6 615 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 Q8TCH9 128 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ESR2Q92731 530 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 IWS1Q96ST2 819 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 C17orf80Q9BSJ5 609 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 SLC13A1Q9BZW2 595 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 MAF1Q9H063 256 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 VAT1LQ9HCJ6 419 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 DIAPH3Q9NSV4 1193 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 INTUQ9ULD6 942 aa7.32□□□□□ -1.24
VIM-207ENST00000495528 ZMYM6O95789 1325 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 NEDD4P46934 1319 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PMS2P1A4D2B8 440 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PATE3B3GLJ2 98 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 HIP1O00291 1037 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 NRP1O14786 923 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 ZNF623O75123 536 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 ITGA10O75578 1167 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 ZNF286BP0CG31 522 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PCP11498 1178 aaKnown RBP7.31□□□□□ -1.24
VIM-207ENST00000495528 GYPEP15421 78 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PER3P56645 1201 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 WNT3AP56704 352 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 C19orf54Q5BKX5 351 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 CASC1Q6TDU7 716 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 FAM180AQ6UWF9 173 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 D2HGDHQ8N465 521 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PPTC7Q8NI37 304 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 MDM1Q8TC05 714 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 ZNF480Q8WV37 535 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 ANKS1AQ92625 1134 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 KATNAL1Q9BW62 490 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 DEF6Q9H4E7 631 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 RNF41Q9H4P4 317 aaPredicted RBP7.31□□□□□ -1.24
VIM-207ENST00000495528 JMJD4Q9H9V9 463 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 PXMP2Q9NR77 195 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 IP6K2Q9UHH9 426 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 MRPL11Q9Y3B7 192 aaKnown RBP7.31□□□□□ -1.24
VIM-207ENST00000495528 INSL6Q9Y581 213 aa7.31□□□□□ -1.24
VIM-207ENST00000495528 TRIP12Q14669 1992 aaPredicted RBP7.31□□□□□ -1.24
VIM-207ENST00000495528 CCDC171Q6TFL3 1326 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 RSPH10B2B2RC85 870 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 ZNF213O14771 459 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 PHF2O75151 1096 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 PPFIA4O75335 1185 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 AMHP03971 560 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 S100BP04271 92 aaPredicted RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 RSPH10BP0C881 870 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 MYCLP12524 364 aaPredicted RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 ECHS1P30084 290 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 THPOP40225 353 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 RECQLP46063 649 aaPredicted RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 HTRA4P83105 476 aaPredicted RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 SP2Q02086 613 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 MST1LQ2TV78 715 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 HSDL1Q3SXM5 330 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 CELF3Q5SZQ8 465 aaKnown RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 Q6ZVL8 140 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 POLNQ7Z5Q5 900 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 RAVER1Q8IY67 606 aaKnown RBP7.3□□□□□ -1.24
VIM-207ENST00000495528 MYOCDQ8IZQ8 938 aa7.3□□□□□ -1.24
VIM-207ENST00000495528 LILRA3Q8N6C8 439 aaPredicted RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms