RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PRDM5Q9NQX1 630 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KLHL8Q9P2G9 620 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC12A6Q9UHW9 1150 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FIS1Q9Y3D6 152 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MSCO60682 206 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KITP10721 976 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GRIK1P39086 918 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RGS2P41220 211 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ATXN1P54253 815 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SNX16P57768 344 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NOMO3P69849 1222 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PDE1BQ01064 536 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PTPN20Q4JDL3 420 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 FBXO47Q5MNV8 452 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LGSNQ5TDP6 509 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DEFB128Q7Z7B8 93 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 THAP11Q96EK4 314 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MRPL45Q9BRJ2 306 aaKnown RBP11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRAIPQ9BWF2 469 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PIDD1Q9HB75 910 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CYP4F11Q9HBI6 524 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PREBQ9HCU5 417 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TBC1D23Q9NUY8 699 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 COMMD3-BMI1R4GMX3 469 aa11.13□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ASS1P00966 412 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KRT7P08729 469 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CD48P09326 243 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 IMPDH2P12268 514 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MYBPC2Q14324 1141 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SPRYD7Q5W111 196 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 WSCD1Q658N2 575 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CDCA2Q69YH5 1023 aaPredicted RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PID1Q7Z2X4 250 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 METTL23Q86XA0 190 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MIB1Q86YT6 1006 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 LRRC57Q8N9N7 239 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NT5C1B-RDH14C9J2C7 533 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 M0QYT0 321 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KDM1AO60341 852 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CPB1P15086 417 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PSEN2P49810 448 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CPT1AP50416 773 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TPD52P55327 224 aaPredicted RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ADIGQ0VDE8 80 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ANO7Q6IWH7 933 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZNF662Q6ZS27 426 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CENPUQ71F23 418 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CASP10Q92851 521 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RMDN2Q96LZ7 410 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PHACTR1Q9C0D0 580 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CDC42EP4Q9H3Q1 356 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NMRK1Q9NWW6 199 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 NOCTQ9UK39 431 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 USP18Q9UMW8 372 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 H3BRJ5 948 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 IL18RAPO95256 599 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MIPP30301 263 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ROR1Q01973 937 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 OVGP1Q12889 678 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CNGA2Q16280 664 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZC3H12AQ5D1E8 599 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 PPP1R26Q5T8A7 1209 aaPredicted RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TTC27Q6P3X3 843 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MTDHQ86UE4 582 aaKnown RBP11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DEPDC1BQ8WUY9 529 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 USP6NLQ92738 828 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MAGEB18Q96M61 343 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ARHGAP39Q9C0H5 1083 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DPEP3Q9H4B8 488 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 VTA1Q9NP79 307 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 XPNPEP3Q9NQH7 507 aa11.12□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DYTNA2CJ06 578 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KCNK1O00180 336 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DFFAO00273 331 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 ZC3H11AO75152 810 aaKnown RBP eCLIP11.11□□□□□ -0.632e-6■■■■■ 41.7
MSH5-SAPCD1-207ENST00000493662 USP12O75317 370 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 STK10O94804 968 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SERPINB8P50452 374 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CBX3Q13185 183 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CNGA3Q16281 694 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SPRED3Q2MJR0 410 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC10A6Q3KNW5 377 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 DCAF12L1Q5VU92 463 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 RNF139Q8WU17 664 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HES6Q96HZ4 224 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SERPINB12Q96P63 405 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 C5orf60A6NFR6 353 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 KIAA0391O15091 583 aaKnown RBP11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CLPTM1O96005 669 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 MMP3P08254 477 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 IQCF3P0C7M6 154 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 GPD1P21695 349 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CD52P31358 61 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 CHKAP35790 457 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TAF6P49848 677 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 BNIP1Q12981 228 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 HIF1AQ16665 826 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 SLC27A1Q6PCB7 646 aa11.11□□□□□ -0.63
MSH5-SAPCD1-207ENST00000493662 TRIM67Q6ZTA4 783 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms