RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 STK4Q13043 487 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 KMT5BQ4FZB7 885 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 C10orf120Q5SQS8 335 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 SLC23A3Q6PIS1 610 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ARMCX6Q7L4S7 300 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 C12orf40Q86WS4 652 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 TMEM25Q86YD3 366 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ETFBKMTQ8IXQ9 262 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 RLN3Q8WXF3 142 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 SPOCK2Q92563 424 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 FOXJ1Q92949 421 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 CYFIP2Q96F07 1278 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 ZFRQ96KR1 1074 aaKnown RBP12.2□□□□□ -0.46
COL6A3-213ENST00000493475 SPATA32Q96LK8 384 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 HNRNPABQ99729 332 aaKnown RBP12.2□□□□□ -0.46
COL6A3-213ENST00000493475 NIF3L1Q9GZT8 377 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 DMAC2Q9NW81 257 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 MARK1Q9P0L2 795 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 NAGPAQ9UK23 515 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 RCOR1Q9UKL0 485 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 TRAF3IP3Q9Y228 551 aa12.2□□□□□ -0.46
COL6A3-213ENST00000493475 KMT2BQ9UMN6 2715 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-213ENST00000493475 H0Y626 953 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 OPHN1O60890 802 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 KRT37O76014 449 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 TRIM16O95361 564 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 HLA-DRAP01903 254 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 PROS1P07225 676 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 RARGP13631 454 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 PFKFB1P16118 471 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 ENGP17813 658 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 GTF2H1P32780 548 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 ASPAP45381 313 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 DNM1Q05193 864 aaKnown RBP12.19□□□□□ -0.46
COL6A3-213ENST00000493475 INCA1Q0VD86 236 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 MAP7D1Q3KQU3 841 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 WDR45BQ5MNZ6 344 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 TPGS1Q6ZTW0 290 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 RSRC2Q7L4I2 434 aaKnown RBP12.19□□□□□ -0.46
COL6A3-213ENST00000493475 FAM186BQ8IYM0 893 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 EFCAB3Q8N7B9 438 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 KIAA0895Q8NCT3 520 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 JAKMIP2Q96AA8 810 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 SMOQ99835 787 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 GTPBP2Q9BX10 602 aaKnown RBP12.19□□□□□ -0.46
COL6A3-213ENST00000493475 TMEM30AQ9NV96 361 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 CLIC5Q9NZA1 410 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 CALCOCO1Q9P1Z2 691 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 NME7Q9Y5B8 376 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 ANAPC1Q9H1A4 1944 aa12.19□□□□□ -0.46
COL6A3-213ENST00000493475 MAP1BP46821 2468 aaKnown RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 A0A1W2PQD8 194 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 ACTN4O43707 911 aaKnown RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 SYNCRIPO60506 623 aaKnown RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 ADAM23O75077 832 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 VNN1O95497 513 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 SERPINF2P08697 491 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 CD58P19256 250 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 PTGER3P43115 390 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 YWHAEP62258 255 aaKnown RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 ZNF33AQ06730 810 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 NFIL3Q16649 462 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 EMC10Q5UCC4 262 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 UNQ6494/PRO21346Q6UXR6 183 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 CLEC20AQ6ZU45 233 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 PAQR9Q6ZVX9 377 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 GRAMD1CQ8IYS0 662 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 RGL4Q8IZJ4 473 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 ZNF276Q8N554 614 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 IPO4Q8TEX9 1081 aaKnown RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 KLF16Q9BXK1 252 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 SCAND2PQ9GZW5 306 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 GZF1Q9H116 711 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-213ENST00000493475 KCTD10Q9H3F6 313 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 TMEM8AQ9HCN3 771 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 PILRBQ9UKJ0 227 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 ATG2BQ96BY7 2078 aa12.18□□□□□ -0.46
COL6A3-213ENST00000493475 PTPRDP23468 1912 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 A0A1B0GVL5 298 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 UPK3BL1B0FP48 263 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 PATE3B3GLJ2 98 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 UPK3BL2E5RIL1 263 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 CDX4O14627 284 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 CYP26A1O43174 497 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 KLRC4O43908 158 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 RHOBTB3O94955 611 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 EPB41P11171 864 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ACADMP11310 421 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 GABRG2P18507 467 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 GCLMP48507 274 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ZNF445P59923 1031 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 DLG4P78352 724 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 SLC14A1Q13336 389 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ORC1Q13415 861 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 ADAM9Q13443 819 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 KRT39Q6A163 491 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 KIAA1324Q6UXG2 1013 aaKnown RBP12.17□□□□□ -0.46
COL6A3-213ENST00000493475 CCDC186Q7Z3E2 898 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 MIB1Q86YT6 1006 aa12.17□□□□□ -0.46
COL6A3-213ENST00000493475 PHTF2Q8N3S3 785 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms