RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 COL28A1Q2UY09 1125 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 CCNI2Q6ZMN8 369 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 RABEPKQ7Z6M1 372 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 LRRC8AQ8IWT6 810 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 C10orf67Q8IYJ2 551 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 CCAR2Q8N163 923 aaKnown RBP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 NAT16Q8N8M0 369 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 PNPLA1Q8N8W4 532 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 UBXN4Q92575 508 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 ZNF419Q96HQ0 510 aaPredicted RBP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 EPSTI1Q96J88 318 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 DUSP9Q99956 384 aaKnown RBP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 TBC1D7Q9P0N9 293 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 TBC1D14Q9P2M4 693 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 SEL1LQ9UBV2 794 aa13.91□□□□□ -0.18
HDAC3-213ENST00000492506 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 ASH1LQ9NR48 2969 aaKnown RBP13.91□□□□□ -0.18
HDAC3-213ENST00000492506 URB1O60287 2271 aaKnown RBP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TBC1D3BA6NDS4 549 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 EFCAB8A8MWE9 144 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 GOLGA6L19H0YKK7 550 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TULP1O00294 542 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TMEM191BP0C7N4 346 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 FTH1P19P0C7X4 201 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 MBL2P11226 248 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 HOXB2P14652 356 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 MDH1BQ5I0G3 518 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 MMS22LQ6ZRQ5 1243 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 DDX42Q86XP3 938 aaKnown RBP eCLIP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TRIML1Q8N9V2 468 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TERB1Q8NA31 727 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 RASSF8Q8NHQ8 419 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 ZNF592Q92610 1267 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 WBP2Q969T9 261 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 OTUB2Q96DC9 234 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 HSPA12BQ96MM6 686 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 BBC3Q96PG8 261 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 ACOX2Q99424 681 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 MRPL45Q9BRJ2 306 aaKnown RBP13.9□□□□□ -0.18
HDAC3-213ENST00000492506 PCIF1Q9H4Z3 704 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 CD93Q9NPY3 652 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 OLFML3Q9NRN5 406 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 KALRNO60229 2985 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 KNL1Q8NG31 2342 aa13.9□□□□□ -0.18
HDAC3-213ENST00000492506 TMEM131Q92545 1883 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 GOLGA4Q13439 2230 aaKnown RBP13.89□□□□□ -0.19
HDAC3-213ENST00000492506 ASXL3Q9C0F0 2248 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 COCHO43405 550 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 CBFA2T3O75081 653 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 GCNT3O95395 438 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 TUBBP07437 444 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SYPP08247 313 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 GAP43P17677 238 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 NDUFV2P19404 249 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 PDCP20941 246 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 NTSR1P30989 418 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 WASP42768 502 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 KRT85P78386 507 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 C10orf76Q5T2E6 689 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 TDRD10Q5VZ19 366 aaKnown RBP13.89□□□□□ -0.19
HDAC3-213ENST00000492506 EGFLAMQ63HQ2 1017 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 TRMT11Q7Z4G4 463 aaKnown RBP13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SLCO6A1Q86UG4 719 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 TMEM25Q86YD3 366 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 NAXDQ8IW45 347 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 BBS7Q8IWZ6 715 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 ANKRD36BP1Q96IX9 119 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SLITRK1Q96PX8 696 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 ZNF518BQ9C0D4 1074 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SCAND2PQ9GZW5 306 aaPredicted RBP13.89□□□□□ -0.19
HDAC3-213ENST00000492506 CBX8Q9HC52 389 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 DEC1Q9P2X7 70 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 DNAI1Q9UI46 699 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 CYP8B1Q9UNU6 501 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SMC3Q9UQE7 1217 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 SHROOM3Q8TF72 1996 aa13.89□□□□□ -0.19
HDAC3-213ENST00000492506 CABIN1Q9Y6J0 2220 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 FRMD3A2A2Y4 597 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GOLGA6L9A6NEM1 432 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 ZNF217O75362 1048 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 TACC1O75410 805 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GJB2P29033 226 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GNL1P36915 607 aaPredicted RBP13.88□□□□□ -0.19
HDAC3-213ENST00000492506 SF3A1Q15459 793 aaKnown RBP13.88□□□□□ -0.19
HDAC3-213ENST00000492506 DUOXA2Q1HG44 320 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 PLEKHG6Q3KR16 790 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 SNX30Q5VWJ9 437 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 HS2ST1Q7LGA3 356 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GLRX5Q86SX6 157 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GPD1LQ8N335 351 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 MDM1Q8TC05 714 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 GABRG3Q99928 467 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 B3GNT5Q9BYG0 378 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 SLC6A17Q9H1V8 727 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 ACBD3Q9H3P7 528 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 DPEP3Q9H4B8 488 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 CCDC86Q9H6F5 360 aaKnown RBP13.88□□□□□ -0.19
HDAC3-213ENST00000492506 SPHK2Q9NRA0 654 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 IL37Q9NZH6 218 aa13.88□□□□□ -0.19
HDAC3-213ENST00000492506 STK17AQ9UEE5 414 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms