RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CYP11A1P05108 521 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 GSTA2P09210 222 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 COL6A1P12109 1028 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 NPR3P17342 541 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 CCND3P30281 292 aaPredicted RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 NOS2P35228 1153 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PHBP35232 272 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 RGS7P49802 495 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 ZNF135P52742 658 aaPredicted RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 SLC8A3P57103 927 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 MRPS5P82675 430 aaKnown RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 KRT81Q14533 505 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 KCNJ11Q14654 390 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 RAB41Q5JT25 222 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 GNASQ5JWF2 1037 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 LHX8Q68G74 356 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 GDF6Q6KF10 455 aaPredicted RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 BEND5Q7L4P6 421 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PRUNE1Q86TP1 453 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 TRABD2AQ86V40 505 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PDIK1LQ8N165 341 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 ATP11CQ8NB49 1132 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 SLC2A14Q8TDB8 520 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 NTAN1Q96AB6 310 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 HAUS1Q96CS2 278 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PGAP3Q96FM1 320 aaPredicted RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 SGSM3Q96HU1 749 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 C9orf72Q96LT7 481 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PWWP2AQ96N64 755 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 NPY6RQ99463 290 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 NRDE2Q9H7Z3 1164 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 PNPLA8Q9NP80 782 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 TMEM51Q9NW97 253 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 RRN3Q9NYV6 651 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 KLK14Q9P0G3 267 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 SAE1Q9UBE0 346 aaPredicted RBP11.17□□□□□ -0.62
USP4-214ENST00000491791 USP3Q9Y6I4 520 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 FAM169AQ9Y6X4 670 aa11.17□□□□□ -0.62
USP4-214ENST00000491791 TSC2P49815 1807 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CLUHO75153 1309 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 MYO1CO00159 1063 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 IFNB1P01574 187 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 THP07101 528 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 C6orf222P0C671 652 aaPredicted RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 RARBP10826 455 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CCDC130P13994 396 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 TKTP29401 623 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 SLCO1A2P46721 670 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 HCAR3P49019 387 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 BCAR1P56945 870 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 GPX6P59796 221 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 YWHAZP63104 245 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 RNASELQ05823 741 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 SCAPQ12770 1279 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 MMRN1Q13201 1228 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 ITIH4Q14624 930 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 KLHL38Q2WGJ6 581 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 DARS2Q6PI48 645 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 RGS9BPQ6ZS82 235 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CYS1Q717R9 158 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 BZW1Q7L1Q6 419 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 PIGZQ86VD9 579 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 TAX1BP1Q86VP1 789 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CDKL3Q8IVW4 592 aaPredicted RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 FAM71DQ8N9W8 422 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 MDM1Q8TC05 714 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 DENND1AQ8TEH3 1009 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CKAP2Q8WWK9 683 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 LRRC39Q96DD0 335 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 SENP8Q96LD8 212 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 UROC1Q96N76 676 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 OLFM3Q96PB7 478 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 APOL6Q9BWW8 343 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 B3GNT5Q9BYG0 378 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 ACSS3Q9H6R3 686 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CSNK1G1Q9HCP0 422 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 NGRNQ9NPE2 291 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 PPANQ9NQ55 473 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 DDX20Q9UHI6 824 aaKnown RBP11.16□□□□□ -0.62
USP4-214ENST00000491791 RABGEF1Q9UJ41 708 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 CDH9Q9ULB4 789 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 RAD54BQ9Y620 910 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 TEX264Q9Y6I9 313 aa11.16□□□□□ -0.62
USP4-214ENST00000491791 A0A0U1RQF3 1178 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 EXOC1LA0A1B0GW35 172 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 TMEM120BA0PK00 339 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 DGKIO75912 1065 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 CABYRO75952 493 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 TMEM63AO94886 807 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 CPP00450 1065 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 PDGFRBP09619 1106 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 SKIP12755 728 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 TPSB2P20231 275 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 MAGEA3P43357 314 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 GEMIN4P57678 1058 aaKnown RBP11.15□□□□□ -0.62
USP4-214ENST00000491791 DYNLT1P63172 113 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 ATP11AP98196 1134 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 CDK16Q00536 496 aa11.15□□□□□ -0.62
USP4-214ENST00000491791 PDIA2Q13087 525 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms