RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 CLASRPQ8N2M8 674 aaKnown RBP6.22□□□□□ -1.41
USP48-209ENST00000487880 PNPLA1Q8N8W4 532 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 EID2BQ96D98 161 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 SERGEFQ9UGK8 458 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 ASAP1Q9ULH1 1129 aa6.22□□□□□ -1.41
USP48-209ENST00000487880 ASNA1O43681 348 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 CSTBP04080 98 aaKnown RBP6.21□□□□□ -1.42
USP48-209ENST00000487880 SERPINF1P36955 418 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 BLMHQ13867 455 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 TMEM196Q5HYL7 178 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 AKNAD1Q5T1N1 836 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 DENND2CQ68D51 928 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 GGT6Q6P531 493 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 NAPRTQ6XQN6 538 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 PIK3AP1Q6ZUJ8 805 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 AMIGO2Q86SJ2 522 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 CACNA2D3Q8IZS8 1091 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 STYXQ8WUJ0 223 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 VPS50Q96JG6 964 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 SNX18Q96RF0 628 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 RMDN3Q96TC7 470 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 PRPF18Q99633 342 aaKnown RBP6.21□□□□□ -1.42
USP48-209ENST00000487880 TP63Q9H3D4 680 aaPredicted RBP6.21□□□□□ -1.42
USP48-209ENST00000487880 R3HDMLQ9H3Y0 253 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 GAR1Q9NY12 217 aaKnown RBP6.21□□□□□ -1.42
USP48-209ENST00000487880 MGAT4CQ9UBM8 478 aa6.21□□□□□ -1.42
USP48-209ENST00000487880 GXYLT2A0PJZ3 443 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 TARM1B6A8C7 271 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 H7C1Q1 480 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 J3KTA2 159 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 PROP1O75360 226 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 TCEA3O75764 348 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 JTBO76095 146 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 ANXA6P08133 673 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 SRGAP2BP0DMP2 458 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 DGKQP52824 942 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 FOXO1Q12778 655 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 DNASE1L3Q13609 305 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 TRIM14Q14142 442 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 GRAMD1BQ3KR37 738 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 LIN54Q6MZP7 749 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 TRIM72Q6ZMU5 477 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 BCDIN3DQ7Z5W3 292 aaKnown RBP6.2□□□□□ -1.42
USP48-209ENST00000487880 PRIMA1Q86XR5 153 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 GATAD2AQ86YP4 633 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 TERB1Q8NA31 727 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 EDC3Q96F86 508 aaKnown RBP6.2□□□□□ -1.42
USP48-209ENST00000487880 MMS19Q96T76 1030 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 KATNAL1Q9BW62 490 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 CIPCQ9C0C6 399 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 ASIC5Q9NY37 505 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 ZNHIT2Q9UHR6 403 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 SCAF8Q9UPN6 1271 aaKnown RBP6.2□□□□□ -1.42
USP48-209ENST00000487880 WNT6Q9Y6F9 365 aa6.2□□□□□ -1.42
USP48-209ENST00000487880 ACKR2O00590 384 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 SUV39H1O43463 412 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 CA12O43570 354 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 TAF5LO75529 589 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 TNFRSF6BO95407 300 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 IGLV2-14P01704 120 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 APEHP13798 732 aaKnown RBP6.19□□□□□ -1.42
USP48-209ENST00000487880 BMP5P22003 454 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 YY1P25490 414 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 GPC5P78333 572 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 HOXA4Q00056 320 aaPredicted RBP6.19□□□□□ -1.42
USP48-209ENST00000487880 MSANTD2Q6P1R3 559 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 BOLLQ8N9W6 283 aaKnown RBP6.19□□□□□ -1.42
USP48-209ENST00000487880 NGDNQ8NEJ9 315 aaKnown RBP6.19□□□□□ -1.42
USP48-209ENST00000487880 OVCA2Q8WZ82 227 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 KAZALD1Q96I82 304 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 RIOX1Q9H6W3 641 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 VPS45Q9NRW7 570 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 KAT6AQ92794 2004 aa6.19□□□□□ -1.42
USP48-209ENST00000487880 LRRC3CA6NJW4 275 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 CTIFO43310 598 aaKnown RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 NUDT3O95989 172 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 MBPP02686 304 aaPredicted RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 VEGFAP15692 232 aaPredicted RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 DRD1P21728 446 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 RENBPP51606 427 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 ALDH18A1P54886 795 aaKnown RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 ELLP55199 621 aaPredicted RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 GRM4Q14833 912 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 ELF2Q15723 593 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 CCDC38Q502W7 563 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 STRIP1Q5VSL9 837 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 FBXO42Q6P3S6 717 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 CCDC174Q6PII3 467 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 ARHGEF25Q86VW2 580 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 ATG16L2Q8NAA4 619 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 OR1N1Q8NGS0 311 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 STT3BQ8TCJ2 826 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 RSC1A1Q92681 617 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 DAZAP1Q96EP5 407 aaKnown RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 PRR11Q96HE9 360 aaPredicted RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 PAAF1Q9BRP4 392 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 EPS8L2Q9H6S3 715 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 SAP30LQ9HAJ7 183 aa6.18□□□□□ -1.42
USP48-209ENST00000487880 COL11A2P13942 1736 aaPredicted RBP6.18□□□□□ -1.42
USP48-209ENST00000487880 PNMA6EA0A0J9YXQ4 647 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms