RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 USP10Q14694 798 aaKnown RBP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 BRI3BPQ8WY22 251 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 IFT43Q96FT9 208 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 ADAM2Q99965 735 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 SLCO1B3Q9NPD5 702 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 XPNPEP3Q9NQH7 507 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.69□□□□□ -0.22
HMGN1-216ENST00000486741 C2CD2Q9Y426 696 aa13.69□□□□□ -0.22
HMGN1-216ENST00000486741 HCRTO43612 131 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 NUDT17P0C025 328 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ODC1P11926 461 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 GOT1P17174 413 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 PTPN1P18031 435 aaKnown RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ATN1P54259 1190 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 BBS12Q6ZW61 710 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 RAB3IL1Q8TBN0 382 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 VPS39Q96JC1 886 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 RNF157Q96PX1 679 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ABCF3Q9NUQ8 709 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 SMIM28A0A1B0GU29 152 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 A0A1W2PPM1 405 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 UBA6A0AVT1 1052 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 PPEF2O14830 753 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 SETSIPP0DME0 302 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 TGM2P21980 687 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 TAF11Q15544 211 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 LRRC38Q5VT99 294 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ZDHHC24Q6UX98 284 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ZNF572Q7Z3I7 529 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 GLIS1Q8NBF1 620 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 E2F7Q96AV8 911 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ALKBH8Q96BT7 664 aaKnown RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ZBED3Q96IU2 234 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ZNF512Q96ME7 567 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 PFDN4Q9NQP4 134 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 HEY2Q9UBP5 337 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 RGS17Q9UGC6 210 aaPredicted RBP13.68□□□□□ -0.22
HMGN1-216ENST00000486741 SHANK3Q9BYB0 1731 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 WDR27A2RRH5 827 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 TULP2O00295 520 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ARHGAP1Q07960 439 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 CCL14Q16627 93 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ANKRD20A8PQ5CZ79 823 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ILDR2Q71H61 639 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 RMDN1Q96DB5 314 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 TBCBQ99426 244 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 TMEM59LQ9UK28 342 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 ST3GAL5Q9UNP4 418 aa13.68□□□□□ -0.22
HMGN1-216ENST00000486741 SPECC1L-ADORA2AF8WAN1 911 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 LMO2P25791 158 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 AVPR1AP37288 418 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 CASP2P42575 452 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 GLRBP48167 497 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 C10orf120Q5SQS8 335 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 OVOS1Q6IE37 1185 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 TFAP2DQ7Z6R9 452 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 B3GALNT2Q8NCR0 500 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 HTR3CQ8WXA8 447 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 MAGEB18Q96M61 343 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 TTC1Q99614 292 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 XAB2Q9HCS7 855 aaKnown RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 MYH7BA7E2Y1 1941 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 RNF103O00237 685 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ZWINTO95229 277 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 MGAT1P26572 445 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 GRM5P41594 1212 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 CDKN2BP42772 138 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ASPAP45381 313 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 SNX17Q15036 470 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 HABP4Q5JVS0 413 aaKnown RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 SLC26A11Q86WA9 606 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 DDX1Q92499 740 aaKnown RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 PTPRN2Q92932 1015 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 HAPLN2Q9GZV7 340 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 SDR42E2A6NKP2 422 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ANKRD22Q5VYY1 191 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 NLRP9Q7RTR0 991 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 SHCBP1Q8NEM2 672 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 MTG1Q9BT17 334 aaPredicted RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 FAM167BQ9BTA0 163 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 TASP1Q9H6P5 420 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 LRRC4CQ9HCJ2 640 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 IRF1P10914 325 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 DARSP14868 501 aaKnown RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 PPM1FP49593 454 aaPredicted RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 OGDHQ02218 1023 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 GBE1Q04446 702 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 EFEMP1Q12805 493 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ZNF235Q14590 738 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 TAF2Q6P1X5 1199 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ZCCHC23Q6ZST2 131 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 MTDHQ86UE4 582 aaKnown RBP13.67□□□□□ -0.22
HMGN1-216ENST00000486741 LONP2Q86WA8 852 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 ATP6V1E2Q96A05 226 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 CXorf56Q9H5V9 222 aa13.67□□□□□ -0.22
HMGN1-216ENST00000486741 C10orf71Q711Q0 1435 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 SLC15A5A6NIM6 579 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 HOXD10P28358 340 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 CD52P31358 61 aa13.66□□□□□ -0.22
HMGN1-216ENST00000486741 NSUN2Q08J23 767 aaKnown RBP eCLIP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms