RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 DDX3YO15523 660 aaKnown RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 NCK2O43639 380 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 URI1O94763 535 aaPredicted RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 ZRANB2O95218 330 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP39-215ENST00000481409 IGLV3-25P01717 112 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 ATP1A1P05023 1023 aaKnown RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 FYNP06241 537 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 HMGA1P17096 107 aaKnown RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 DDX6P26196 483 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP39-215ENST00000481409 CDC25CP30307 473 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 HTR7P34969 479 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 PTPN7P35236 360 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 PAFAH1B1P43034 410 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 GPR15P49685 360 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 SULT1E1P49888 294 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 PEX5P50542 639 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 DEUP1Q05D60 604 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 ITIH3Q06033 890 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 EIF4EBP2Q13542 120 aaPredicted RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 PDK2Q15119 407 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 ODF2Q5BJF6 829 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 DNAJB7Q7Z6W7 309 aaPredicted RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 SCD5Q86SK9 330 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 MNS1Q8NEH6 495 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 CMASQ8NFW8 434 aaPredicted RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 SLC7A14Q8TBB6 771 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 ACTRT1Q8TDG2 376 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 FAM172AQ8WUF8 416 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 CASP10Q92851 521 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 NTAN1Q96AB6 310 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 PIWIL1Q96J94 861 aaKnown RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 BTBD6Q96KE9 485 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 GCNAQ96QF7 691 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 TRIM7Q9C029 511 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 L2HGDHQ9H9P8 463 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP39-215ENST00000481409 CHORDC1Q9UHD1 332 aaPredicted RBP10.6□□□□□ -0.71
USP39-215ENST00000481409 MTUS1Q9ULD2 1270 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 TLR6Q9Y2C9 796 aa10.6□□□□□ -0.71
USP39-215ENST00000481409 A0A1W2PQH9 124 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 M0QYT0 321 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 KCNK3O14649 394 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 ENC1O14682 589 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 ZNF197O14709 1029 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 GRAP2O75791 330 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 GJB6O95452 261 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 TRUB2O95900 331 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 POU3F3P20264 500 aaPredicted RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 MIPP30301 263 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 IRS1P35568 1242 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 ATP5C1P36542 298 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 CXCR3P49682 368 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 EPHA5P54756 1037 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 HDAC4P56524 1084 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 USP46P62068 366 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 SLC25A11Q02978 314 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 RING1Q06587 406 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 SCAPQ12770 1279 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 PPP2R5DQ14738 602 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 TAF5Q15542 800 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 PPP2R5EQ16537 467 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 ERMARDQ5T6L9 678 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 SEL1L2Q5TEA6 688 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 TRNP1Q6NT89 227 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 TMEM184AQ6ZMB5 413 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 RSRC2Q7L4I2 434 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 RASGEF1CQ8N431 466 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 CEP112Q8N8E3 955 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 GIPC2Q8TF65 315 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 NSUN3Q9H649 340 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 RETREG1Q9H6L5 497 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 TLE6Q9H808 572 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP39-215ENST00000481409 GMIPQ9P107 970 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 RCOR3Q9P2K3 495 aaPredicted RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 SLC12A6Q9UHW9 1150 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 NAALADL1Q9UQQ1 740 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 USTQ9Y2C2 406 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 HBS1LQ9Y450 684 aaKnown RBP10.59□□□□□ -0.71
USP39-215ENST00000481409 MRFAP1Q9Y605 127 aa10.59□□□□□ -0.71
USP39-215ENST00000481409 ZNF840PA6NDX5 716 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 IRAK2O43187 625 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 SOAT2O75908 522 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 F11P03951 625 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 RARGP13631 454 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 PTPN2P17706 415 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 CCR1P32246 355 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 SSR1P43307 286 aaKnown RBP10.58□□□□□ -0.72
USP39-215ENST00000481409 COG7P83436 770 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 ATP11AP98196 1134 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 IFRD2Q12894 506 aaPredicted RBP10.58□□□□□ -0.72
USP39-215ENST00000481409 C15orf59Q2T9L4 293 aaPredicted RBP10.58□□□□□ -0.72
USP39-215ENST00000481409 HECTD3Q5T447 861 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 CCDC181Q5TID7 509 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 SDHAF4Q5VUM1 108 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 SYPL2Q5VXT5 272 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 HFE2Q6ZVN8 426 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 ZNF572Q7Z3I7 529 aaPredicted RBP10.58□□□□□ -0.72
USP39-215ENST00000481409 UNC45BQ8IWX7 931 aa10.58□□□□□ -0.72
USP39-215ENST00000481409 ARFGAP1Q8N6T3 406 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 316.2 ms