RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SLC2A12Q8TD20 617 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SLC22A17Q8WUG5 538 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SOCS4Q8WXH5 440 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 MCRS1Q96EZ8 462 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 NRDE2Q9H7Z3 1164 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 OLA1Q9NTK5 396 aaKnown RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 DKK2Q9UBU2 259 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 NKX1-2Q9UD57 310 aaPredicted RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 SLC45A1Q9Y2W3 748 aa5.8□□□□□ -1.48
UPF3B-203ENST00000478840 UBE2J1Q9Y385 318 aaPredicted RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 LAS1LQ9Y4W2 734 aaKnown RBP5.8□□□□□ -1.48
UPF3B-203ENST00000478840 STX16-NPEPL1H3BU86 382 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 K7ENM7 598 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 RNASET2O00584 256 aaKnown RBP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 STX16O14662 325 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 PPM1DO15297 605 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 SEPT4O43236 478 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 SCAF4O95104 1147 aaKnown RBP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 HNRNPA1P09651 372 aaKnown RBP eCLIP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 ACO1P21399 889 aaKnown RBP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 PSMC2P35998 433 aaKnown RBP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 DGKQP52824 942 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 CASP6P55212 293 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 RRP1BQ14684 758 aaKnown RBP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 BEAN1Q3B7T3 259 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 SPDYE7PQ495Y7 208 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 RABL3Q5HYI8 236 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 ACAD10Q6JQN1 1059 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 RAB11FIP4Q86YS3 637 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 SYNE4Q8N205 404 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.79□□□□□ -1.48
UPF3B-203ENST00000478840 C11orf44Q8N8P7 122 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 CCDC89Q8N998 374 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 SUPT20HQ8NEM7 779 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 Q8TCH9 128 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 ADAMTS15Q8TE58 950 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 ZUFSPQ96AP4 578 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 PRDM13Q9H4Q3 707 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 IRAK4Q9NWZ3 460 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 JAG2Q9Y219 1238 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 NOX1Q9Y5S8 564 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 CYP46A1Q9Y6A2 500 aa5.79□□□□□ -1.48
UPF3B-203ENST00000478840 MBD3L5A6NJ08 208 aaPredicted RBP5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ZNF623O75123 536 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 TMEM225BP0DP42 221 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 HIBADHP31937 336 aaKnown RBP5.78□□□□□ -1.48
UPF3B-203ENST00000478840 BMPR1AP36894 532 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 GSTM5P46439 218 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 EIF4A1P60842 406 aaKnown RBP5.78□□□□□ -1.48
UPF3B-203ENST00000478840 AAK1Q2M2I8 961 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ZNF484Q5JVG2 852 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ZNF569Q5MCW4 686 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 C16orf54Q6UWD8 224 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 GLB1LQ6UWU2 654 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 KRBA2Q6ZNG9 492 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 C1QL4Q86Z23 238 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 CTHRC1Q96CG8 243 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 RNF31Q96EP0 1072 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 NPAS1Q99742 590 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ACTRT3Q9BYD9 372 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ALOXE3Q9BYJ1 711 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 TPSD1Q9BZJ3 242 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 CCDC134Q9H6E4 229 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 PLEKHA5Q9HAU0 1116 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 AKIP1Q9NQ31 210 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 AASSQ9UDR5 926 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 ARHGAP26Q9UNA1 814 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 RABGAP1Q9Y3P9 1069 aa5.78□□□□□ -1.48
UPF3B-203ENST00000478840 TRGV11A0A075B6L2 103 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 A1L4Q6 167 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 ANKRD18BA2A2Z9 1011 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 DYTNA2CJ06 578 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 SLC16A3O15427 465 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 NKX2-8O15522 239 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 HNRNPRO43390 633 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 PROM1O43490 865 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 USO1O60763 962 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 NCR1O76036 304 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 RTN3O95197 1032 aaPredicted RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 CSF1P09603 554 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 PPP3CBP16298 524 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 TGM1P22735 817 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 RBM6P78332 1123 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 FAM189BP81408 668 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 TOB2Q14106 344 aaPredicted RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 CCDC30Q5VVM6 783 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 TTLL5Q6EMB2 1281 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 LRRC8DQ7L1W4 858 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 FASTKD5Q7L8L6 764 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 LIMS2Q7Z4I7 341 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 PTGR2Q8N8N7 351 aaPredicted RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 FSIP1Q8NA03 581 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 ZMIZ2Q8NF64 920 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 TDRD7Q8NHU6 1098 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 GLG1Q92896 1179 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 WDYHV1Q96HA8 205 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 REXO5Q96IC2 774 aaKnown RBP5.77□□□□□ -1.49
UPF3B-203ENST00000478840 TOX2Q96NM4 488 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 CHCHD6Q9BRQ6 235 aa5.77□□□□□ -1.49
UPF3B-203ENST00000478840 GLOD4Q9HC38 313 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms