RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NOC3LQ8WTT2 800 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ATOH1Q92858 354 aaPredicted RBP7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 TCEAL4Q96EI5 215 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 MCRS1Q96EZ8 462 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 SHDQ96IW2 340 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 HSPA12BQ96MM6 686 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 C7orf25Q9BPX7 421 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 CBWD1Q9BRT8 395 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 PCIF1Q9H4Z3 704 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 TBC1D17Q9HA65 648 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 KIAA1586Q9HCI6 787 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 CEP72Q9P209 647 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 HSFX1Q9UBD0 423 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ITGA11Q9UKX5 1188 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 PCDHA7Q9UN72 937 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ASB3Q9Y575 518 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 VPS13AQ96RL7 3174 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 PATJQ8NI35 1801 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 PVALEFA0A1B0GWK0 134 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF233A6NK53 670 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 H0Y858 1186 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ETV2O00321 342 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 PI15O43692 258 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ICMTO60725 284 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 VNN2O95498 520 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 FGF19O95750 216 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TNNC2P02585 160 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ITGB3P05106 788 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 KRT19P08727 400 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TMEM191BP0C7N4 346 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TMEM253P0C7T8 217 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 MYL4P12829 197 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 GLDCP23378 1020 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ARNTP27540 789 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 POLR2BP30876 1174 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 CCR2P41597 374 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TUFMP49411 452 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 EPHA5P54756 1037 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 STARD6P59095 220 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SNRPFP62306 86 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 VEPH1Q14D04 833 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SURF1Q15526 300 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 MLF2Q15773 248 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 MGAT5BQ3V5L5 792 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 RESP18Q5W5W9 173 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 WSCD1Q658N2 575 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 EPM2AIP1Q7L775 607 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ITIH5Q86UX2 942 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SULF2Q8IWU5 870 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 CCDC105Q8IYK2 499 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 DCP1BQ8IZD4 617 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 CSGALNACT2Q8N6G5 542 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TTC9BQ8N6N2 239 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 LRRC52Q8N7C0 313 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ATAD1Q8NBU5 361 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ZSWIM2Q8NEG5 633 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 OR10T2Q8NGX3 314 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF507Q8TCN5 953 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 C2orf15Q8WU43 125 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 HPS3Q969F9 1004 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ELSPBP1Q96BH3 223 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 BORCS6Q96GS4 357 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ANKRD36BP1Q96IX9 119 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ASB16Q96NS5 453 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 TMEM209Q96SK2 561 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SEPT5Q99719 369 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 MTMR12Q9C0I1 747 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 GPR88Q9GZN0 384 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ZCWPW1Q9H0M4 648 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 DNAJC25Q9H1X3 360 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SLITRK6Q9H5Y7 841 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 ZFP14Q9HCL3 533 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 PDE11AQ9HCR9 933 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 HSPBP1Q9NZL4 362 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 RCOR1Q9UKL0 485 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 AGAP1Q9UPQ3 857 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 SIT1Q9Y3P8 196 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 R3HCC1Q9Y3T6 440 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 PTPRDP23468 1912 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 FANCMQ8IYD8 2048 aa7.3□□□□□ -1.24
CCDC88A-213ENST00000476903 GREB1Q4ZG55 1949 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 EIF1AYO14602 144 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 HUS1O60921 280 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 MOSPD3O75425 235 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 FCARP24071 287 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 HOXD13P35453 343 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 KRT85P78386 507 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 RBP5P82980 135 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TSPY1Q01534 308 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 BFSP1Q12934 665 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 MYO1EQ12965 1108 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SNW1Q13573 536 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TEAD2Q15562 447 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 SLC44A4Q53GD3 710 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 FAM78AQ5JUQ0 283 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TANGO2Q6ICL3 276 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 HS2ST1Q7LGA3 356 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 DNAJB7Q7Z6W7 309 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 TMC8Q8IU68 726 aa7.29□□□□□ -1.24
CCDC88A-213ENST00000476903 CBWD2Q8IUF1 395 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms