RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	NCAM1	P13591	858 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	ECHS1	P30084	290 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	RPL21	P46778	160 aa	Known RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	KCNJ1	P48048	391 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	HCAR3	P49019	387 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	PSEN1	P49768	467 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	PLTP	P55058	493 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	RPL10A	P62906	217 aa	Known RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	FAM193A	P78312	1265 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	MRPS25	P82663	173 aa	Known RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	OTUD4	Q01804	1114 aa	Known RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	SCAP	Q12770	1279 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	GPR17	Q13304	367 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	SNX1	Q13596	522 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	OASL	Q15646	514 aa	Known RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	USP41	Q3LFD5	358 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	SLC39A12	Q504Y0	691 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	ANKRD20A8P	Q5CZ79	823 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	SLC9A4	Q6AI14	798 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.43	□□□□□ -0.58
SND1-208	ENST00000470463	GPR65	Q8IYL9	337 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	DEFB123	Q8N688	67 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	CLEC4C	Q8WTT0	213 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	RSAD2	Q8WXG1	361 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	PEBP4	Q96S96	227 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	KCNK16	Q96T55	309 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	TTPAL	Q9BTX7	342 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	TRIM31	Q9BZY9	425 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	PHACTR1	Q9C0D0	580 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	ZDHHC18	Q9NUE0	388 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	KLHL11	Q9NVR0	708 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	DNPEP	Q9ULA0	475 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	FZD10	Q9ULW2	581 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	SNX24	Q9Y343	169 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	NEU2	Q9Y3R4	380 aa		11.43	□□□□□ -0.58
SND1-208	ENST00000470463	GOLGA6L10	A6NI86	522 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	HACD1	B0YJ81	288 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	GOLGA8K	D6RF30	607 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	DGKI	O75912	1065 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	USP17L7	P0C7H9	530 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	IGFBP6	P24592	240 aa	Predicted RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	L1CAM	P32004	1257 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	SLC11A1	P49279	550 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	BCAR1	P56945	870 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	EIF3E	P60228	445 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	NOMO1	Q15155	1222 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	BRMS1L	Q5PSV4	323 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	SH3PXD2A	Q5TCZ1	1133 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	BTBD8	Q5XKL5	378 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	TMC3	Q7Z5M5	1100 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	DEFB128	Q7Z7B8	93 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	LRRTM3	Q86VH5	581 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	MON1A	Q86VX9	555 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	CEP57	Q86XR8	500 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	GSPT2	Q8IYD1	628 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	CMTR2	Q8IYT2	770 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	NUP93	Q8N1F7	819 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	ACTL9	Q8TC94	416 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	ATG4A	Q8WYN0	398 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	TOP1MT	Q969P6	601 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	LRCH3	Q96II8	777 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	PAWR	Q96IZ0	340 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	SPATA17	Q96L03	361 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	HERPUD2	Q9BSE4	406 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	DHX35	Q9H5Z1	703 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	OLA1	Q9NTK5	396 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	GRHL1	Q9NZI5	618 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	ANAPC5	Q9UJX4	755 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	MAFF	Q9ULX9	164 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	SCML2	Q9UQR0	700 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.42	□□□□□ -0.58
SND1-208	ENST00000470463	BACE2	Q9Y5Z0	518 aa		11.42	□□□□□ -0.58
SND1-208	ENST00000470463	YJEFN3	A6XGL0	299 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463		E7ENQ6	273 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	SGK1	O00141	431 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	NCAM2	O15394	837 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	RBP3	P10745	1247 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	SLC2A3	P11169	496 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	RARG	P13631	454 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	CPB1	P15086	417 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	RAG1	P15918	1043 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	LAG3	P18627	525 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	CYP2F1	P24903	491 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	KLRC2	P26717	231 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	ADRA1B	P35368	520 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	TUFM	P49411	452 aa	Known RBP	11.41	□□□□□ -0.58
SND1-208	ENST00000470463	NDUFV1	P49821	464 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	SLC5A3	P53794	718 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	ROR1	Q01973	937 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	CREM	Q03060	361 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	DHX9	Q08211	1270 aa	Known RBP	11.41	□□□□□ -0.58
SND1-208	ENST00000470463	MORF4L2	Q15014	288 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	LRIT3	Q3SXY7	679 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	BSPRY	Q5W0U4	402 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	MFSD5	Q6N075	450 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	HOOK3	Q86VS8	718 aa		11.41	□□□□□ -0.58
SND1-208	ENST00000470463	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
SND1-208	ENST00000470463	RELL1	Q8IUW5	271 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms