RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 WBP2Q969T9 261 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 VCPIP1Q96JH7 1222 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 LRRC3BQ96PB8 259 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 POPDC2Q9HBU9 364 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 ASNSD1Q9NWL6 643 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 SMPD4Q9NXE4 827 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 GDE1Q9NZC3 331 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 EPS15L1Q9UBC2 864 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 CNOT8Q9UFF9 292 aaKnown RBP15.47■□□□□ 0.07
COL9A3-209ENST00000469852 SFMBT1Q9UHJ3 866 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 STRIP2Q9ULQ0 834 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 TFR2Q9UP52 801 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 USTQ9Y2C2 406 aa15.47■□□□□ 0.07
COL9A3-209ENST00000469852 REXO2Q9Y3B8 237 aaKnown RBP15.47■□□□□ 0.07
COL9A3-209ENST00000469852 MSI1O43347 362 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 HSF2BPO75031 334 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 NDUFA10O95299 355 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 LCA5LO95447 670 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CKMP06732 381 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 GLI1P08151 1106 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 MBL2P11226 248 aaPredicted RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RALAP11233 206 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 NCAM1P13591 858 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RPL7AP62424 266 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CCZ1BP86790 482 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CCZ1P86791 482 aaPredicted RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RAB6CQ53S08 254 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 TANGO2Q6ICL3 276 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 PLEKHA7Q6IQ23 1121 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 DNAJC24Q6P3W2 148 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 PARM1Q6UWI2 310 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 MIB1Q86YT6 1006 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CCDC170Q8IYT3 715 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 ZNF276Q8N554 614 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 TDRD5Q8NAT2 981 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 ACRBPQ8NEB7 543 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 DQX1Q8TE96 717 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RSAD2Q8WXG1 361 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 ANP32BQ92688 251 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RPP25Q9BUL9 199 aaKnown RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 PLA2G2FQ9BZM2 168 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 TRIM7Q9C029 511 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RAB6CQ9H0N0 254 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 GKN1Q9NS71 199 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CALCOCO1Q9P1Z2 691 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 WDR35Q9P2L0 1181 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 MYO1AQ9UBC5 1043 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 RASAL2Q9UJF2 1139 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 CPQQ9Y646 472 aa15.46■□□□□ 0.07
COL9A3-209ENST00000469852 EPN1Q9Y6I3 576 aaPredicted RBP15.46■□□□□ 0.07
COL9A3-209ENST00000469852 EIF3CLB5ME19 914 aaKnown RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 LOC730098B7Z3J9 87 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 RFC1P35251 1148 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 CYLC1P35663 651 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 ATP5C1P36542 298 aaKnown RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 AVPR1AP37288 418 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 SLC7A9P82251 487 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 OGDHQ02218 1023 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 ZP2Q05996 745 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 MAMLD1Q13495 774 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 DCAF6Q58WW2 860 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 PPP1R2P3Q6NXS1 205 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 MSANTD2Q6P1R3 559 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 RSRC2Q7L4I2 434 aaKnown RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 BEND5Q7L4P6 421 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 TAC4Q86UU9 113 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 GOLGA1Q92805 767 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 SMARCD2Q92925 531 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 CFAP57Q96MR6 1250 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 MCEEQ96PE7 176 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 EIF3CQ99613 913 aaKnown RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 KXD1Q9BQD3 176 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 DESI2Q9BSY9 194 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 SELENOOQ9BVL4 669 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 C1QTNF1Q9BXJ1 281 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 KLF16Q9BXK1 252 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 EPHX3Q9H6B9 360 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 FAM50BQ9Y247 325 aa15.45■□□□□ 0.06
COL9A3-209ENST00000469852 KIF26AQ9ULI4 1882 aaPredicted RBP15.45■□□□□ 0.06
COL9A3-209ENST00000469852 A0A0U1RQJ8 604 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 ANKRD62A6NC57 917 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 RCCD1A6NED2 376 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 C2CD4BA6NLJ0 364 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 SIGLEC16A6NMB1 481 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 SOBPA7XYQ1 873 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 CAPN9O14815 690 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 SCAMP3O14828 347 aaKnown RBP15.44■□□□□ 0.06
COL9A3-209ENST00000469852 CYP1A2P05177 515 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 HMBSP08397 361 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 IRF1P10914 325 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 KRT3P12035 628 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 PFKLP17858 780 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 WEE1P30291 646 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 MATKP42679 507 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 HTR4Q13639 388 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 KLHDC10Q6PID8 442 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 ADHFE1Q8IWW8 467 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 TTC16Q8NEE8 873 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 RNF139Q8WU17 664 aa15.44■□□□□ 0.06
COL9A3-209ENST00000469852 RXFP2Q8WXD0 754 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms