RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 SLC9A6Q92581 669 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 R3HDM4Q96D70 268 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 EIF3CQ99613 913 aaKnown RBP5□□□□□ -1.61
CDC42BPA-211ENST00000466538 ARHGEF3Q9NR81 526 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 SLC2A4RGQ9NR83 387 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 LIN7CQ9NUP9 197 aaKnown RBP5□□□□□ -1.61
CDC42BPA-211ENST00000466538 TMLHEQ9NVH6 421 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 LZTS1Q9Y250 596 aa5□□□□□ -1.61
CDC42BPA-211ENST00000466538 VWC2LB2RUY7 222 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 B9A039 149 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TMPRSS11DO60235 418 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 VNN1O95497 513 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 CER1O95813 267 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TK1P04183 234 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 CHRM2P08172 466 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 MYCLP12524 364 aaPredicted RBP4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 CREB1P16220 341 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 MAKP20794 623 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 ADRA1DP25100 572 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 AKT1P31749 480 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 PBX1P40424 430 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TPTEP56180 551 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TBX2Q13207 712 aaPredicted RBP4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 CUL4BQ13620 913 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 RPS6KA2Q15349 733 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TXNRD1Q16881 649 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 AASDHQ4L235 1098 aaPredicted RBP4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 CCDC144NLQ6NUI1 221 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 ANKRD16Q6P6B7 361 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 ANKS1BQ7Z6G8 1248 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 KRTAP19-1Q8IUB9 90 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 LRRC71Q8N4P6 559 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 TEX19Q8NA77 164 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 AFG1LQ8WV93 481 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 C3orf49Q96BT1 292 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 ELAC1Q9H777 363 aaKnown RBP4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 RIC8AQ9NPQ8 531 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 G6PC2Q9NQR9 355 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 RASSF1Q9NS23 344 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 MGAT4CQ9UBM8 478 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 DKK3Q9UBP4 350 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 SLC13A4Q9UKG4 626 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 AMFRQ9UKV5 643 aa4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 REXO2Q9Y3B8 237 aaKnown RBP4.99□□□□□ -1.61
CDC42BPA-211ENST00000466538 SPRY2O43597 315 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 ORC4O43929 436 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 RPP40O75818 363 aaKnown RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 ESRRBO95718 433 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 TFRCP02786 760 aaKnown RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 PYGLP06737 847 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 NR2F6P10588 404 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 SERPINA4P29622 427 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 GRIA3P42263 894 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 DGCR2P98153 550 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 TLE2Q04725 743 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 DNASE1L3Q13609 305 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 RALBP1Q15311 655 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 SMAD1Q15797 465 aaKnown RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 CYP1B1Q16678 543 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 BTBD16Q32M84 506 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 P3H1Q32P28 736 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 INTS11Q5TA45 600 aaKnown RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 FNDC7Q5VTL7 733 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 PTCHD4Q6ZW05 846 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 Q6ZWC4 215 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 C2CD5Q86YS7 1000 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 TMEM57Q8N5G2 664 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 PNPLA1Q8N8W4 532 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 SH3RF3Q8TEJ3 882 aaPredicted RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 SLC22A17Q8WUG5 538 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 HMGB4Q8WW32 186 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 LINC00476Q8WZB0 136 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 MLST8Q9BVC4 326 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 KRTAP4-8Q9BYQ9 185 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 CYP4F11Q9HBI6 524 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 NOD2Q9HC29 1040 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 FBXO28Q9NVF7 368 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 SYBUQ9NX95 663 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 CCNL1Q9UK58 526 aaPredicted RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 FEM1BQ9UK73 627 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 ZBTB1Q9Y2K1 713 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 UBE2J1Q9Y385 318 aaPredicted RBP4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 COL4A3Q01955 1670 aa4.98□□□□□ -1.61
CDC42BPA-211ENST00000466538 RRN3P2A6NIE6 340 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 HMGB1P1B2RPK0 211 aaPredicted RBP4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 E7EVH7 732 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 PPP6R2O75170 966 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 URI1O94763 535 aaPredicted RBP4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 TTLL1O95922 423 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 FAM163BP0C2L3 166 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 ZNF37AP17032 561 aaPredicted RBP4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 DRD1P21728 446 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 MPLP40238 635 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 CLCN2P51788 898 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 PRKAA2P54646 552 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 SF3A3Q12874 501 aaKnown RBP eCLIP4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 MPP3Q13368 585 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 CBFBQ13951 182 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 JAKMIP3Q5VZ66 844 aa4.97□□□□□ -1.61
CDC42BPA-211ENST00000466538 GRHL2Q6ISB3 625 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms