RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 A0A1W2PQH9 124 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 STX10O60499 249 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 NDUFS2O75306 463 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 TRIM49P0CI25 452 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 TRIM49CP0CI26 452 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 CHRM1P11229 460 aaPredicted RBP16.2■□□□□ 0.18
SKA3-204ENST00000462482 COG7P83436 770 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 ENPEPQ07075 957 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 STARD3Q14849 445 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 NFIL3Q16649 462 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 EGFLAMQ63HQ2 1017 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 GPRIN1Q7Z2K8 1008 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 ARHGAP18Q8N392 663 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 FRMD1Q8N878 549 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 DEFB124Q8NES8 71 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 TAS1R2Q8TE23 839 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 IPO4Q8TEX9 1081 aaKnown RBP16.2■□□□□ 0.18
SKA3-204ENST00000462482 WBP2Q969T9 261 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 GTPBP2Q9BX10 602 aaKnown RBP16.2■□□□□ 0.18
SKA3-204ENST00000462482 DCLK3Q9C098 648 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.2■□□□□ 0.18
SKA3-204ENST00000462482 PILRBQ9UKJ0 227 aa16.2■□□□□ 0.18
SKA3-204ENST00000462482 SDK1Q7Z5N4 2213 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 GFRA2O00451 464 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 TRIM24O15164 1050 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 RHOBTB3O94955 611 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 PROS1P07225 676 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 ITPKAP23677 461 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 CHKAP35790 457 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 PGFP49763 221 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 KIF11P52732 1056 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 ZNF33AQ06730 810 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 ADAM9Q13443 819 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 PKP1Q13835 747 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 SYCP2LQ5T4T6 812 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 KRT39Q6A163 491 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 CCDC186Q7Z3E2 898 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 MIB1Q86YT6 1006 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 GUF1Q8N442 669 aaKnown RBP16.19■□□□□ 0.18
SKA3-204ENST00000462482 DEFB119Q8N690 84 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 UCMAQ8WVF2 138 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 BHMTQ93088 406 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 HEXIM2Q96MH2 286 aaKnown RBP16.19■□□□□ 0.18
SKA3-204ENST00000462482 TWNKQ96RR1 684 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 DUSP16Q9BY84 665 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 TMEM8AQ9HCN3 771 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 TMEM74BQ9NUR3 256 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 OSER1Q9NX31 292 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 CLIC5Q9NZA1 410 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 RASAL2Q9UJF2 1139 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 STRIP2Q9ULQ0 834 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 CYP8B1Q9UNU6 501 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 MAPK8IP1Q9UQF2 711 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 HPSEQ9Y251 543 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 ATP6V1DQ9Y5K8 247 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 CACNA1BQ00975 2339 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 GREB1Q4ZG55 1949 aa16.19■□□□□ 0.18
SKA3-204ENST00000462482 A0A1W2PQF6 199 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 HHLA1C9JL84 531 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 MDM4O15151 490 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 GREM1O60565 184 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 OPHN1O60890 802 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 CILPO75339 1184 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 CYBBP04839 570 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 SYPP08247 313 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 SERPINF2P08697 491 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 GTF2H1P32780 548 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 ZNF394Q53GI3 561 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 C1orf220Q5T0J3 134 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 KIAA1324Q6UXG2 1013 aaKnown RBP16.18■□□□□ 0.18
SKA3-204ENST00000462482 UNQ6494/PRO21346Q6UXR6 183 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 RSRC2Q7L4I2 434 aaKnown RBP16.18■□□□□ 0.18
SKA3-204ENST00000462482 RGL4Q8IZJ4 473 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 ZNF276Q8N554 614 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 FOXJ1Q92949 421 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 FAXDC2Q96IV6 333 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 GABRG3Q99928 467 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 NMUR1Q9HB89 426 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 APOBEC3GQ9HC16 384 aaKnown RBP16.18■□□□□ 0.18
SKA3-204ENST00000462482 SUSD2Q9UGT4 822 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 NUDT5Q9UKK9 219 aa16.18■□□□□ 0.18
SKA3-204ENST00000462482 IGHV1OR15-9A0A0B4J2B8 117 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 NPC1O15118 1278 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 GNSP15586 552 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 NDUFV2P19404 249 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 NDUFA8P51970 172 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 PPP3CAQ08209 521 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 WDR45BQ5MNZ6 344 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 PEAR1Q5VY43 1037 aaPredicted RBP16.17■□□□□ 0.18
SKA3-204ENST00000462482 TRIML1Q8N9V2 468 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 HSPA12BQ96MM6 686 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 ACOX2Q99424 681 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 SCAND2PQ9GZW5 306 aaPredicted RBP16.17■□□□□ 0.18
SKA3-204ENST00000462482 FAM124BQ9H5Z6 455 aaPredicted RBP16.17■□□□□ 0.18
SKA3-204ENST00000462482 CACNA2D2Q9NY47 1150 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 PLK2Q9NYY3 685 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 RALGAPA1Q6GYQ0 2036 aa16.17■□□□□ 0.18
SKA3-204ENST00000462482 A0A1W2PQD8 194 aa16.16■□□□□ 0.18
SKA3-204ENST00000462482 PRRT4C9JH25 899 aa16.16■□□□□ 0.18
SKA3-204ENST00000462482 CETN3O15182 167 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms