RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SERPINB9P50453 376 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ZNF143P52747 638 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 NRLP54845 237 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ELF3P78545 371 aaPredicted RBP12.04□□□□□ -0.48
NPHP4-204ENST00000460696 CRADDP78560 199 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 TSPY1Q01534 308 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 SLC6A3Q01959 620 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 GRAMD1BQ3KR37 738 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 BTBD8Q5XKL5 378 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MFSD5Q6N075 450 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 HDAC11Q96DB2 347 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 ARHGAP39Q9C0H5 1083 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 GGA2Q9UJY4 613 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 MYH4Q9Y623 1939 aa12.04□□□□□ -0.48
NPHP4-204ENST00000460696 PABPN1LA6NDY0 278 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 B3GAT3O94766 335 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ELF1P32519 619 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ICAM3P32942 547 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 LRRC36Q1X8D7 754 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 RASIP1Q5U651 963 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ITPRIPL1Q6GPH6 555 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SLC27A1Q6PCB7 646 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 B3GNT9Q6UX72 402 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 TAS1R3Q7RTX0 852 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 NSL1Q96IY1 281 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SNRNP25Q9BV90 132 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ELOVL4Q9GZR5 314 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 GRID1Q9ULK0 1009 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ATP8B3O60423 1300 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 KPNA7A9QM74 516 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ALOX15BO15296 676 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 CA12O43570 354 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 MSCO60682 206 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 USP12O75317 370 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 BST2Q10589 180 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ART3Q13508 389 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 FASTKD1Q53R41 847 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 DEFB106AQ8N104 65 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 THEM5Q8N1Q8 247 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 COLGALT1Q8NBJ5 622 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SLC26A7Q8TE54 656 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 FRMD8Q9BZ67 464 aaPredicted RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 C20orf96Q9NUD7 363 aaPredicted RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 GTSE1Q9NYZ3 720 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ARMCX1Q9P291 453 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ZMYND8Q9ULU4 1186 aaPredicted RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 PPME1Q9Y570 386 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 TNRC6CQ9HCJ0 1690 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SHANK3Q9BYB0 1731 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 B4GALT4O60513 344 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ARIH2O95376 493 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SERPINB4P48594 390 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 PPP1R26Q5T8A7 1209 aaPredicted RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ANKRD22Q5VYY1 191 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ZCCHC23Q6ZST2 131 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 POLNQ7Z5Q5 900 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 PRPF39Q86UA1 669 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 HASPINQ8TF76 798 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 EDEM1Q92611 657 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 RNF157Q96PX1 679 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 SRPK1Q96SB4 655 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 TMEM120AQ9BXJ8 343 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 GON4LQ3T8J9 2241 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 LMNAP02545 664 aaKnown RBP12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ATP4AP20648 1035 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 MAP3K21Q5TCX8 1036 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 C12orf42Q96LP6 360 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 STRA6Q9BX79 667 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 OSBPL1AQ9BXW6 950 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 MID2Q9UJV3 735 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ANGPTL2Q9UKU9 493 aa12.03□□□□□ -0.48
NPHP4-204ENST00000460696 ARAP2Q8WZ64 1704 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 SDR42E2A6NKP2 422 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 C3orf70A6NLC5 250 aaPredicted RBP12.02□□□□□ -0.48
NPHP4-204ENST00000460696 SERPINB3P29508 390 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 PNPLA4P41247 253 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 AQP5P55064 265 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 WNT7BP56706 349 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 RPL10AP62906 217 aaKnown RBP12.02□□□□□ -0.48
NPHP4-204ENST00000460696 POU5F1Q01860 360 aaKnown RBP12.02□□□□□ -0.48
NPHP4-204ENST00000460696 CRELD2Q6UXH1 353 aaPredicted RBP12.02□□□□□ -0.48
NPHP4-204ENST00000460696 RASAL3Q86YV0 1011 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 IPMKQ8NFU5 416 aa12.02□□□□□ -0.48
NPHP4-204ENST00000460696 CPSF2Q9P2I0 782 aaKnown RBP12.02□□□□□ -0.48
NPHP4-204ENST00000460696 GRIK1P39086 918 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 USP10Q14694 798 aaKnown RBP12.02□□□□□ -0.49
NPHP4-204ENST00000460696 PCSK7Q16549 785 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 CCL14Q16627 93 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 RGS9BPQ6ZS82 235 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 IPO11Q9UI26 975 aaKnown RBP12.02□□□□□ -0.49
NPHP4-204ENST00000460696 SLC39A10Q9ULF5 831 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 ABCA3Q99758 1704 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 COL22A1Q8NFW1 1626 aaPredicted RBP12.02□□□□□ -0.49
NPHP4-204ENST00000460696 PRRC2BQ5JSZ5 2229 aaKnown RBP12.02□□□□□ -0.49
NPHP4-204ENST00000460696 TM9SF1O15321 606 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 SMIM24O75264 130 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 ZBTB48P10074 688 aaPredicted RBP12.02□□□□□ -0.49
NPHP4-204ENST00000460696 TKTL1P51854 596 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 COG7P83436 770 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms