RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 LMO3Q8TAP4 145 aa13.11□□□□□ -0.31
CPSF4-208ENST00000452047 P2RY11Q96G91 374 aa13.11□□□□□ -0.31
CPSF4-208ENST00000452047 CNOT6LQ96LI5 555 aaKnown RBP13.11□□□□□ -0.31
CPSF4-208ENST00000452047 CDK5RAP1Q96SZ6 601 aaKnown RBP13.11□□□□□ -0.31
CPSF4-208ENST00000452047 DUSP15Q9H1R2 295 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-208ENST00000452047 DEC1Q9P2X7 70 aa13.11□□□□□ -0.31
CPSF4-208ENST00000452047 LSM7Q9UK45 103 aaKnown RBP13.11□□□□□ -0.31
CPSF4-208ENST00000452047 HCN2Q9UL51 889 aa13.11□□□□□ -0.31
CPSF4-208ENST00000452047 CTNND2Q9UQB3 1225 aa13.11□□□□□ -0.31
CPSF4-208ENST00000452047 NUP205Q92621 2012 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 BICDL2A1A5D9 508 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 NEDD8-MDP1E9PL57 170 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 O00370 1275 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 DCLK1O15075 740 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 TRIM24O15164 1050 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 P4HA2O15460 535 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 KLF8O95600 359 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-208ENST00000452047 KLKB1P03952 638 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 RALAP11233 206 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 TYRP14679 529 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 SDHBP21912 280 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 TKTL1P51854 596 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 DGKEP52429 567 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ATXN1P54253 815 aaKnown RBP13.1□□□□□ -0.31
CPSF4-208ENST00000452047 MARSP56192 900 aaKnown RBP13.1□□□□□ -0.31
CPSF4-208ENST00000452047 SLC8A3P57103 927 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 PDE4CQ08493 712 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 BST2Q10589 180 aaKnown RBP13.1□□□□□ -0.31
CPSF4-208ENST00000452047 PAK1Q13153 545 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 PKDCCQ504Y2 493 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 SGO2Q562F6 1265 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 PLA2G2CQ5R387 149 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ANO7Q6IWH7 933 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 MIB1Q86YT6 1006 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 TRIM59Q8IWR1 403 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 NT5C1BQ96P26 610 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 BBS2Q9BXC9 721 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 TPSD1Q9BZJ3 242 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ULBP1Q9BZM6 244 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ARRDC1-AS1Q9H2J1 176 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ZDHHC4Q9NPG8 344 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 CDV3Q9UKY7 258 aaKnown RBP13.1□□□□□ -0.31
CPSF4-208ENST00000452047 ABCA7Q8IZY2 2146 aa13.1□□□□□ -0.31
CPSF4-208ENST00000452047 SPTBN2O15020 2390 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 TNRC6BQ9UPQ9 1833 aaKnown RBP13.09□□□□□ -0.31
CPSF4-208ENST00000452047 THADAQ6YHU6 1953 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 MED19A0JLT2 244 aaPredicted RBP13.09□□□□□ -0.31
CPSF4-208ENST00000452047 TBC1D3BA6NDS4 549 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 ZBED1O96006 694 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 PAEPP09466 180 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 VDRP11473 427 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 CD19P15391 556 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 STX17P56962 302 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 YWHAGP61981 247 aaKnown RBP eCLIP13.09□□□□□ -0.31
CPSF4-208ENST00000452047 EFEMP1Q12805 493 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 PREPLQ4J6C6 727 aaPredicted RBP13.09□□□□□ -0.31
CPSF4-208ENST00000452047 EOGTQ5NDL2 527 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 C10orf76Q5T2E6 689 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 TPGS1Q6ZTW0 290 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 ARHGAP18Q8N392 663 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 PPM1KQ8N3J5 372 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 OLIG1Q8TAK6 271 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 NETO1Q8TDF5 533 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 KCNV2Q8TDN2 545 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 TFAP2BQ92481 460 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 KAT5Q92993 513 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 ZSWIM1Q9BR11 485 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 DNAJC17Q9NVM6 304 aaKnown RBP13.09□□□□□ -0.31
CPSF4-208ENST00000452047 WDR35Q9P2L0 1181 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 HESX1Q9UBX0 185 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 RASAL2Q9UJF2 1139 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 KIAA1257Q9ULG3 409 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 STARD13Q9Y3M8 1113 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 PCDHGA5Q9Y5G8 931 aa13.09□□□□□ -0.31
CPSF4-208ENST00000452047 RNF225M0QZC1 329 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 GDF9O60383 454 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 FOXD2O60548 495 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ZNF806P0C7X5 589 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 SETSIPP0DME0 302 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 MPLP40238 635 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ZNF132P52740 706 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 UBE2HP62256 183 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 COG7P83436 770 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 GCNT1Q02742 428 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ADIGQ0VDE8 80 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 SF3A2Q15428 464 aaKnown RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ELF2Q15723 593 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 CCDC6Q16204 474 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 USP39Q53GS9 565 aaKnown RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 GRAMD4Q6IC98 578 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 TMEM270Q6UE05 265 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 LCLAT1Q6UWP7 414 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 TOGARAM2Q6ZUX3 1019 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ARHGEF19Q8IW93 802 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 ZNF513Q8N8E2 541 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 TRIML1Q8N9V2 468 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 UBA3Q8TBC4 463 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 KCTD13Q8WZ19 329 aa13.08□□□□□ -0.32
CPSF4-208ENST00000452047 NDRG1Q92597 394 aaKnown RBP13.08□□□□□ -0.32
CPSF4-208ENST00000452047 XPO6Q96QU8 1125 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms