RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PJA2O43164 708 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 PDGFRAP16234 1089 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 FLT3P36888 993 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 RPL7AP62424 266 aaKnown RBP16.49■□□□□ 0.23
USP40-206ENST00000443711 KIF5AQ12840 1032 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 TCEAL1Q15170 157 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 PUS10Q3MIT2 529 aaKnown RBP16.49■□□□□ 0.23
USP40-206ENST00000443711 SYPL2Q5VXT5 272 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 MSANTD2Q6P1R3 559 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 GET4Q7L5D6 327 aaPredicted RBP16.49■□□□□ 0.23
USP40-206ENST00000443711 DENND4AQ7Z401 1863 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 EMC1Q8N766 993 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 ARL14EPQ8N8R7 260 aaPredicted RBP16.49■□□□□ 0.23
USP40-206ENST00000443711 SLC35G2Q8TBE7 412 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 RXFP2Q8WXD0 754 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 RFFLQ8WZ73 363 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 RNF38Q9H0F5 515 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 GDE1Q9NZC3 331 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 DNMT3LQ9UJW3 386 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 NUDT5Q9UKK9 219 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 CDH7Q9ULB5 785 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 STAP1Q9ULZ2 295 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 FAM50BQ9Y247 325 aa16.49■□□□□ 0.23
USP40-206ENST00000443711 SZT2Q5T011 3432 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 A0A0A6YYK5 440 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 RCCD1A6NED2 376 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 C2CD4BA6NLJ0 364 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 COCHO43405 550 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 TBX18O95935 607 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 MBL2P11226 248 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 DESP17661 470 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 GPD1P21695 349 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 SDC4P31431 198 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 GBP2P32456 591 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 AVPR1AP37288 418 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 EFEMP1Q12805 493 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 SLC25A52Q3SY17 297 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 STXBP5Q5T5C0 1151 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 NPAS3Q8IXF0 933 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 CMTM8Q8IZV2 173 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 ZNF564Q8TBZ8 553 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 FGF13Q92913 245 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 CYP2S1Q96SQ9 504 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 RASAL2Q9UJF2 1139 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 TFR2Q9UP52 801 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 ZFP37Q9Y6Q3 630 aaPredicted RBP16.48■□□□□ 0.23
USP40-206ENST00000443711 DOCK8Q8NF50 2099 aa16.48■□□□□ 0.23
USP40-206ENST00000443711 REV3LO60673 3130 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 BTNL10A8MVZ5 291 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 DPYSL4O14531 572 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 MTA2O94776 668 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 OLFM2O95897 454 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 CKMP06732 381 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 WEE1P30291 646 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 GBP1P32455 592 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 PTPN9P43378 593 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 ZNF143P52747 638 aaPredicted RBP16.47■□□□□ 0.23
USP40-206ENST00000443711 SLC7A9P82251 487 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 PTCRAQ6ISU1 281 aaPredicted RBP16.47■□□□□ 0.23
USP40-206ENST00000443711 TRNP1Q6NT89 227 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 OTOP3Q7RTS5 596 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 DQX1Q8TE96 717 aaKnown RBP16.47■□□□□ 0.23
USP40-206ENST00000443711 FNIP1Q8TF40 1166 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 NT5C3BQ969T7 300 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 SLC22A12Q96S37 553 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 NPY6RQ99463 290 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 CNPY3Q9BT09 278 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 LACRTQ9GZZ8 138 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 SMOC2Q9H3U7 446 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 TMEM51Q9NW97 253 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 MARCH2Q9P0N8 246 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 SFMBT1Q9UHJ3 866 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 LCMT1Q9UIC8 334 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 ANAPC7Q9UJX3 599 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 PPP2R2CQ9Y2T4 447 aa16.47■□□□□ 0.23
USP40-206ENST00000443711 NUP210Q8TEM1 1887 aaPredicted RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 MYO1FO00160 1098 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 MDM4O15151 490 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 TRUB2O95900 331 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 F9P00740 461 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 NOP2P46087 812 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 SULT1E1P49888 294 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 KPNA1P52294 538 aaPredicted RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 HADHBP55084 474 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 COG7P83436 770 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 SMAD2Q15796 467 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 AAK1Q2M2I8 961 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 CCDC14Q49A88 953 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 TAC4Q86UU9 113 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 MIB1Q86YT6 1006 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 ZSCAN18Q8TBC5 510 aaPredicted RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 ACSF2Q96CM8 615 aaPredicted RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 CALR3Q96L12 384 aaKnown RBP16.46■□□□□ 0.23
USP40-206ENST00000443711 ZSWIM3Q96MP5 696 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 CFAP57Q96MR6 1250 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 SERPINB11Q96P15 392 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 MYADMQ96S97 322 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 TBCBQ99426 244 aa16.46■□□□□ 0.23
USP40-206ENST00000443711 TSGA10Q9BZW7 698 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms