RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PAFAH2Q99487 392 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 UNC93B1Q9H1C4 597 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 UBN1Q9NPG3 1134 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 EURLQ9NYK6 297 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 C5orf42Q9H799 3197 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 UNC80Q8N2C7 3258 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SMIM28A0A1B0GU29 152 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 MCF2LO15068 1137 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 VDRP11473 427 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 NDUFV1P49821 464 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 IRX4P78413 519 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 GBE1Q04446 702 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SOWAHAQ2M3V2 549 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ARMCX6Q7L4S7 300 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ECHDC2Q86YB7 292 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PPIL6Q8IXY8 311 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 DNAJC5GQ8N7S2 189 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ADAM32Q8TC27 787 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 MCRS1Q96EZ8 462 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SNX27Q96L92 541 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 CFHR5Q9BXR6 569 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 DHX35Q9H5Z1 703 aaKnown RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 ZNF395Q9H8N7 513 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 ECT2Q9H8V3 914 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PCDH9Q9HC56 1237 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ETNK2Q9NVF9 386 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ASNSD1Q9NWL6 643 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 C2CD2Q9Y426 696 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 FARP1Q9Y4F1 1045 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 IPPQ9Y573 584 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 XIRP2A4UGR9 3374 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 BPTFQ12830 3046 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 E2F8A0AVK6 867 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 CXorf49A8MYA2 514 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 KBTBD13C9JR72 458 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 HAS3O00219 553 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 GMPRP36959 345 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ERFP50548 548 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ZNF143P52747 638 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 SLC10A2Q12908 348 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 OLIG2Q13516 323 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ZNF449Q6P9G9 518 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 FAM131BQ86XD5 332 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PDIK1LQ8N165 341 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PLD5Q8N7P1 536 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 NIPA2Q8N8Q9 360 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ANKLE1Q8NAG6 615 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PCDH19Q8TAB3 1148 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 TCP10LQ8TDR4 215 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 N4BP2L2Q92802 583 aaPredicted RBP9.85□□□□□ -0.83
CUX1-206ENST00000437600 FAM149B1Q96BN6 582 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SLC13A1Q9BZW2 595 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 WBP1LQ9NX94 342 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 SLC17A6Q9P2U8 582 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 ITGA11Q9UKX5 1188 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 PHTF1Q9UMS5 762 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 CDY2AQ9Y6F7 541 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 NUMBLQ9Y6R0 609 aa9.85□□□□□ -0.83
CUX1-206ENST00000437600 BEST1O76090 585 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 SUN1O94901 812 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 ASMTLO95671 621 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 ATP5DP30049 168 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 NUMBP49757 651 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 BCAR1P56945 870 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 GJA9P57773 515 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 COPS2P61201 443 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 BMPR2Q13873 1038 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 UBXN11Q5T124 520 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 LRRC6Q86X45 466 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 PTPRN2Q92932 1015 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 DEFB118Q96PH6 123 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 SNRNP25Q9BV90 132 aaKnown RBP9.84□□□□□ -0.83
CUX1-206ENST00000437600 KDM4CQ9H3R0 1056 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 TRMT13Q9NUP7 481 aaKnown RBP9.84□□□□□ -0.83
CUX1-206ENST00000437600 MAD1L1Q9Y6D9 718 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 SRRM3A6NNA2 597 aaPredicted RBP9.84□□□□□ -0.83
CUX1-206ENST00000437600 APOC4-APOC2K7ER74 178 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 APOC2P02655 101 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 NEFHP12036 1026 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 ELF1P32519 619 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 MSH2P43246 934 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 ARL4CP56559 192 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 GEMIN4P57678 1058 aaKnown RBP9.84□□□□□ -0.83
CUX1-206ENST00000437600 IL9RQ01113 521 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 FAAP100Q0VG06 881 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 IRF5Q13568 498 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 DCAF4L1Q3SXM0 396 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 PLEKHG4Q58EX7 1191 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 MAP3K21Q5TCX8 1036 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 HHATQ5VTY9 493 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 CROCCP2Q86T23 111 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 PARP9Q8IXQ6 854 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 MPP5Q8N3R9 675 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 PQLC3Q8N755 202 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 PPM1NQ8N819 430 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 SMG8Q8ND04 991 aaKnown RBP9.84□□□□□ -0.83
CUX1-206ENST00000437600 ITFG2Q969R8 447 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 SERAC1Q96JX3 654 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 RNF157Q96PX1 679 aa9.84□□□□□ -0.83
CUX1-206ENST00000437600 NPHS2Q9NP85 383 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms