RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 FAM149B1Q96BN6 582 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 PPP1R13BQ96KQ4 1090 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 CPXM1Q96SM3 734 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 NELL2Q99435 816 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 LHX5Q9H2C1 402 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 TBC1D14Q9P2M4 693 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 SFMBT1Q9UHJ3 866 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 LSM7Q9UK45 103 aaKnown RBP19.54■□□□□ 0.72
SHH-203ENST00000435425 STRIP2Q9ULQ0 834 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 DAAM1Q9Y4D1 1078 aa19.54■□□□□ 0.72
SHH-203ENST00000435425 MMEP08473 750 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 RPL34P49207 117 aaKnown RBP19.53■□□□□ 0.72
SHH-203ENST00000435425 MLLT6P55198 1093 aaPredicted RBP19.53■□□□□ 0.72
SHH-203ENST00000435425 UBASH3AP57075 661 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 TMEM110Q86TL2 294 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 CCDC105Q8IYK2 499 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 SLC20A1Q8WUM9 679 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 NOX5Q96PH1 765 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 SYNCQ9H7C4 482 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 OLA1Q9NTK5 396 aaKnown RBP19.53■□□□□ 0.72
SHH-203ENST00000435425 HCN4Q9Y3Q4 1203 aa19.53■□□□□ 0.72
SHH-203ENST00000435425 PAPSS1O43252 624 aaPredicted RBP19.52■□□□□ 0.72
SHH-203ENST00000435425 STC2O76061 302 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 GJA4P35212 333 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 COG7P83436 770 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 NR1I3Q14994 352 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 OR6B2Q6IFH4 312 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 FMNL3Q8IVF7 1028 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 ADGRG2Q8IZP9 1017 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 TMEM35BQ8NCS4 154 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 RNF214Q8ND24 703 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 EPS8L1Q8TE68 723 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 DDX1Q92499 740 aaKnown RBP19.52■□□□□ 0.72
SHH-203ENST00000435425 MSANTD3Q96H12 275 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 LMAN1LQ9HAT1 526 aa19.52■□□□□ 0.72
SHH-203ENST00000435425 NCAM2O15394 837 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 CYP17A1P05093 508 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 NCAM1P13591 858 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 AMPD2Q01433 879 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 DHCR24Q15392 516 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 NAIF1Q69YI7 327 aaPredicted RBP19.51■□□□□ 0.71
SHH-203ENST00000435425 HTR3DQ70Z44 454 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 KIAA1958Q8N8K9 716 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 IPO4Q8TEX9 1081 aaKnown RBP19.51■□□□□ 0.71
SHH-203ENST00000435425 CHFRQ96EP1 664 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 OSBPL6Q9BZF3 934 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 IFNKQ9P0W0 207 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 NOCTQ9UK39 431 aaKnown RBP19.51■□□□□ 0.71
SHH-203ENST00000435425 NAALADL1Q9UQQ1 740 aa19.51■□□□□ 0.71
SHH-203ENST00000435425 A0A1W2PQC6 194 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 CAPN9O14815 690 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 SART1O43290 800 aaKnown RBP19.5■□□□□ 0.71
SHH-203ENST00000435425 MSI1O43347 362 aaKnown RBP19.5■□□□□ 0.71
SHH-203ENST00000435425 GREM1O60565 184 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 ERBB2P04626 1255 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 GALK1P51570 392 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 CDR2Q01850 454 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 PTPN20Q4JDL3 420 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 LY6G5CQ5SRR4 150 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 C1orf228Q6PIY5 440 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 RHBDF2Q6PJF5 856 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 FAM183BPQ6ZVS7 135 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 DTWD2Q8NBA8 298 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 CPA5Q8WXQ8 436 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 OTUB2Q96DC9 234 aa19.5■□□□□ 0.71
SHH-203ENST00000435425 PIWIL1Q96J94 861 aaKnown RBP19.5■□□□□ 0.71
SHH-203ENST00000435425 RBM12Q9NTZ6 932 aaKnown RBP19.5■□□□□ 0.71
SHH-203ENST00000435425 GRAP2O75791 330 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 KLKB1P03952 638 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 FYNP06241 537 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 CHRNB2P17787 502 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 CORO1AP31146 461 aaKnown RBP19.49■□□□□ 0.71
SHH-203ENST00000435425 SNX16P57768 344 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 TAF5Q15542 800 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 ANO4Q32M45 955 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 NAA35Q5VZE5 725 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 TPGS1Q6ZTW0 290 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 ERICH1Q86X53 443 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 ZNF677Q86XU0 584 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 TMEM25Q86YD3 366 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 DENND1CQ8IV53 801 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 P2RY13Q9BPV8 354 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 SPHK2Q9NRA0 654 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 SEPT11Q9NVA2 429 aaKnown RBP19.49■□□□□ 0.71
SHH-203ENST00000435425 DLGAP2Q9P1A6 1054 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 ZNF318Q5VUA4 2279 aa19.49■□□□□ 0.71
SHH-203ENST00000435425 ADH1CP00326 375 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 CHRNB1P11230 501 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 ADH5P11766 374 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 CDH5P33151 784 aaPredicted RBP19.48■□□□□ 0.71
SHH-203ENST00000435425 YWHAZP63104 245 aaKnown RBP19.48■□□□□ 0.71
SHH-203ENST00000435425 FMO1Q01740 532 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 FZD5Q13467 585 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 C2CD6Q53TS8 623 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 SYPL2Q5VXT5 272 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 MSANTD2Q6P1R3 559 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 ZNF687Q8N1G0 1237 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 NAT16Q8N8M0 369 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 ADAM32Q8TC27 787 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 CD101Q93033 1021 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms