RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 HIRAP54198 1017 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 VPS52Q8N1B4 723 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 PCDH19Q8TAB3 1148 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 CENPIQ92674 756 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 ACAP3Q96P50 834 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 C11orf84Q9BUA3 381 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 DNAI2Q9GZS0 605 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 WWP1Q9H0M0 922 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 ASCC2Q9H1I8 757 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 NKX1-2Q9UD57 310 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 DCTN4Q9UJW0 460 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 SBF1O95248 1867 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 WDR91A4D1P6 747 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 GOLGA8RI6L899 631 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 TXNP10599 105 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 RAP1GDS1P52306 607 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 SARNPP82979 210 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 ZBTB16Q05516 673 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 SEMA5AQ13591 1074 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 STEAP4Q687X5 459 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 KYAT3Q6YP21 454 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 ZNF410Q86VK4 478 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 PSTKQ8IV42 348 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 LRRC52Q8N7C0 313 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 SLC35F5Q8WV83 523 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 QKIQ96PU8 341 aaKnown RBP eCLIP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 MMP19Q99542 508 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 EBNA1BP2Q99848 306 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 SNRNP25Q9BV90 132 aaKnown RBP14.17□□□□□ -0.14
COL6A3-207ENST00000433762 NRDE2Q9H7Z3 1164 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 ARL8BQ9NVJ2 186 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 KCNH4Q9UQ05 1017 aa14.17□□□□□ -0.14
COL6A3-207ENST00000433762 F8W8V4 182 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 RFPL1O75677 317 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 RARBP10826 455 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 ARF4P18085 180 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 BGNP21810 368 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 RBL1P28749 1068 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 SERPINB3P29508 390 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 FDFT1P37268 417 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 OCRLQ01968 901 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 ZRSR2Q15696 482 aaKnown RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 GOLGA7BQ2TAP0 167 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 GADL1Q6ZQY3 521 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 EEPD1Q7L9B9 569 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 ERO1BQ86YB8 467 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 LMNTD2Q8IXW0 634 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 PPM1NQ8N819 430 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 UBA3Q8TBC4 463 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 FAM172AQ8WUF8 416 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 TRAPPC12Q8WVT3 735 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 TTC17Q96AE7 1141 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 SIGLEC10Q96LC7 697 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 TSPAN18Q96SJ8 248 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 FAM96AQ9H5X1 160 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 EIF2B3Q9NR50 452 aaKnown RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 PCDHA11Q9Y5I1 949 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 GYG2O15488 501 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 SNNO75324 88 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 NEFHP12036 1026 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 IREB2P48200 963 aaKnown RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 OVGP1Q12889 678 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 PCBP1Q15365 356 aaKnown RBP eCLIP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 C15orf59Q2T9L4 293 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 TEX44Q53QW1 395 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 C1orf228Q6PIY5 440 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 SLC26A9Q7LBE3 791 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 PRPF39Q86UA1 669 aaKnown RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 GTF3C2Q8WUA4 911 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 E2F7Q96AV8 911 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 CFAP36Q96G28 342 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 KLF6Q99612 283 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-207ENST00000433762 PLAC1Q9HBJ0 212 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 HESX1Q9UBX0 185 aa14.16□□□□□ -0.14
COL6A3-207ENST00000433762 SF3B1O75533 1304 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 A0A087WZ62 844 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 FCHO1O14526 889 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 SMNDC1O75940 238 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 ALDH1A2O94788 518 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 ESRRAP11474 423 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 INSRRP14616 1297 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 VHLP40337 213 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 MRPS35P82673 323 aaKnown RBP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 WASHC5Q12768 1159 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 GPR162Q16538 588 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 SH3PXD2AQ5TCZ1 1133 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 UNC5AQ6ZN44 842 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 MARK2Q7KZI7 788 aaKnown RBP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 TMPRSS6Q8IU80 811 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 KHSRPQ92945 711 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 FDXACB1Q9BRP7 624 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 NAT9Q9BTE0 207 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 MOCS1Q9NZB8 636 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 MORF4L1Q9UBU8 362 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 SUFUQ9UMX1 484 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 NUMBLQ9Y6R0 609 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 ZNF236Q9UL36 1845 aa14.15□□□□□ -0.14
COL6A3-207ENST00000433762 RBM47A0AV96 593 aaKnown RBP14.15□□□□□ -0.14
COL6A3-207ENST00000433762 CAPN14A8MX76 684 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms