RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SYCE2Q6PIF2 218 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 NUDT22Q9BRQ3 303 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 RXFP3Q9NSD7 469 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 ASIC5Q9NY37 505 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 SLC39A10Q9ULF5 831 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 ASAP1Q9ULH1 1129 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 DTNAQ9Y4J8 743 aa6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 FNDC1Q4ZHG4 1894 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-206ENST00000430086 ABHD14A-ACY1A0A1B0GW23 586 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 TCRBV5S1A1TA0A578 114 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 LINC01548A6NM66 108 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 BTBD19C9JJ37 291 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 MT-CO3P00414 261 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 VIPP01282 170 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 PRKCGP05129 697 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 NHLRC4P0CG21 123 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 APEHP13798 732 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 RHBDL3P58872 404 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 CFHR3Q02985 330 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 KCNJ12Q14500 433 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 AASDHQ4L235 1098 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 ARHGAP15Q53QZ3 475 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 C12orf76Q8N812 135 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 EDC3Q96F86 508 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 FYTTD1Q96QD9 318 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 WDR12Q9GZL7 423 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 RIPOR2Q9Y4F9 1068 aa6.61□□□□□ -1.35
CCDC88A-206ENST00000430086 WIPF3A6NGB9 483 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 POC1B-GALNT4F8VUJ3 575 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 H3BNC9 293 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 ZSCAN9O15535 394 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 GLP2RO95838 553 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 CHRM5P08912 532 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 IL6STP40189 918 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 PBX1P40424 430 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 COPB1P53618 953 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 TUBA4AP68366 448 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 DNASE1L3Q13609 305 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 PRAMEF17Q5VTA0 474 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 SPICE1Q8N0Z3 855 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 GALNT4Q8N4A0 578 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 ADAMTS18Q8TE60 1221 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 GRAMD1AQ96CP6 724 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 C18orf8Q96DM3 657 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 MPHOSPH6Q99547 160 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 HELLSQ9NRZ9 838 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 CDC23Q9UJX2 597 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 LRCH1Q9Y2L9 728 aa6.6□□□□□ -1.35
CCDC88A-206ENST00000430086 LOC102724159A0A0B4J2E5 919 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 GOLGA6L3A6NEY3 463 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 MANSC4A6NHS7 340 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 TISP43B9A030 160 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 SMIM22K7EJ46 135 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 DHHO43323 396 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 TPD52L2O43399 206 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 GPC5P78333 572 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 TXNL4AP83876 142 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 SLC10A2Q12908 348 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 STARD3Q14849 445 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 PWP2Q15269 919 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 FAM90A2PQ658T7 463 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 CHSY1Q86X52 802 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 CLASRPQ8N2M8 674 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 OVCA2Q8WZ82 227 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 DPF1Q92782 380 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 MUL1Q969V5 352 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 KAZALD1Q96I82 304 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 RITA1Q96K30 269 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 CINPQ9BW66 212 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 PLCB1Q9NQ66 1216 aa6.59□□□□□ -1.35
CCDC88A-206ENST00000430086 PRRT4C9JH25 899 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 UBE2Q2LH0YL09 131 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 CA12O43570 354 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 NTSR2O95665 410 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 LATS1O95835 1130 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 SRGAP2BP0DMP2 458 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 ATF7P17544 494 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 GRM1Q13255 1194 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 FAM187BQ17R55 369 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 TMEM196Q5HYL7 178 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 DPY19L2P1Q6NXN4 242 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 SERPINA13PQ6UXR4 307 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 SKAP1Q86WV1 359 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 RASGRP3Q8IV61 690 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 MAFAQ8NHW3 353 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 CCDC17Q96LX7 622 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 ASB2Q96Q27 587 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 VPS45Q9NRW7 570 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 IGSF9Q9P2J2 1179 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 TAGLN3Q9UI15 199 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 FZD4Q9ULV1 537 aa6.58□□□□□ -1.36
CCDC88A-206ENST00000430086 A0A087WV62 115 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 FFAR2O15552 330 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 ZNF37AP17032 561 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 YY1P25490 414 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 TNFAIP2Q03169 654 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 CCDC15Q0P6D6 951 aa6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 LARS2Q15031 903 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 TRIM71Q2Q1W2 868 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-206ENST00000430086 TMEM119Q4V9L6 283 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms