RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ZNF276Q8N554 614 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 NAT16Q8N8M0 369 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 HMGB4Q8WW32 186 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 SEMA4DQ92854 862 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 HEXIM2Q96MH2 286 aaKnown RBP12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 GSDMAQ96QA5 445 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 BBS2Q9BXC9 721 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 NMUR1Q9HB89 426 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 CISHQ9NSE2 258 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 RAB20Q9NX57 234 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 INVSQ9Y283 1065 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 STARD13Q9Y3M8 1113 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 USP3Q9Y6I4 520 aa12.16□□□□□ -0.46
SQSTM1-203ENST00000422245 LNP1A1A4G5 178 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 TM4SF5O14894 197 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 KHNYNO15037 678 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 MDM4O15151 490 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 SMC2O95347 1197 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 HOXB2P14652 356 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 TYRP14679 529 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 NTSR1P30989 418 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 DPP6P42658 865 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 DHPSP49366 369 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ZNF394Q53GI3 561 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 DCAF17Q5H9S7 520 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 SPDYCQ5MJ68 293 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ZNF658Q5TYW1 1059 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 TCERG1LQ5VWI1 586 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ARHGAP17Q68EM7 881 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 LPCAT2Q7L5N7 544 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 SCD5Q86SK9 330 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ZC3H3Q8IXZ2 948 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 EEF2KMTQ96G04 330 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 TMEM176AQ96HP8 235 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 CNTNAP3BQ96NU0 1288 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ARID3AQ99856 593 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 CNTNAP3Q9BZ76 1288 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 UBXN6Q9BZV1 441 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 HOOK1Q9UJC3 728 aaKnown RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 CIZ1Q9ULV3 898 aaPredicted RBP12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 ZNF510Q9Y2H8 683 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 CACNA1BQ00975 2339 aa12.15□□□□□ -0.46
SQSTM1-203ENST00000422245 CHD8Q9HCK8 2581 aa12.15□□□□□ -0.47
SQSTM1-203ENST00000422245 TNRC6BQ9UPQ9 1833 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 ZBTB24O43167 697 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 MAP3K13O43283 966 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 STC2O76061 302 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 HOXD12P35452 270 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 PRCPP42785 496 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 DGKGP49619 791 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 RAD23BP54727 409 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 YWHAEP62258 255 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 COG7P83436 770 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 FKBP3Q00688 224 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 LRRC63Q05C16 580 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 BECN1Q14457 450 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 MAP7D1Q3KQU3 841 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 SDE2Q6IQ49 451 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 TPGS1Q6ZTW0 290 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 PIGZQ86VD9 579 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 MIB1Q86YT6 1006 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 CHPFQ8IZ52 775 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 PGBD3Q8N328 593 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 SLC4A11Q8NBS3 891 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 RLN3Q8WXF3 142 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 LSM14BQ9BX40 385 aaKnown RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 DCLK3Q9C098 648 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 ZDHHC4Q9NPG8 344 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 EVLQ9UI08 416 aaPredicted RBP12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 RASAL2Q9UJF2 1139 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 NUDT5Q9UKK9 219 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 STRIP2Q9ULQ0 834 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 COQ4Q9Y3A0 265 aa12.14□□□□□ -0.47
SQSTM1-203ENST00000422245 TRIM24O15164 1050 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 PENKP01210 267 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CHKAP35790 457 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 BCAT1P54687 386 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CUL2Q13617 745 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CBWD6Q4V339 395 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 RAB41Q5JT25 222 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CBWD3Q5JTY5 395 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CBWD5Q5RIA9 395 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 DAB2IPQ5VWQ8 1189 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 LYSMD4Q5XG99 296 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 EGFLAMQ63HQ2 1017 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 SLC36A4Q6YBV0 504 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 RSRC2Q7L4I2 434 aaKnown RBP12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 ANKRD52Q8NB46 1076 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 SPATA20Q8TB22 786 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 PIGKQ92643 395 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 SMARCE1Q969G3 411 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 GABRG3Q99928 467 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 TMEM9BQ9NQ34 198 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 CALCOCO1Q9P1Z2 691 aa12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 ARMCX3Q9UH62 379 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 MBD1Q9UIS9 605 aaPredicted RBP12.13□□□□□ -0.47
SQSTM1-203ENST00000422245 MAP1BP46821 2468 aaKnown RBP12.12□□□□□ -0.47
SQSTM1-203ENST00000422245 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.12□□□□□ -0.47
SQSTM1-203ENST00000422245 A0A1W2PQF6 199 aa12.12□□□□□ -0.47
SQSTM1-203ENST00000422245 C4orf47A7E2U8 309 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms