RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 C8orf48Q96LL4 319 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 B3GNT5Q9BYG0 378 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 C11orf49Q9H6J7 331 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 XAB2Q9HCS7 855 aaKnown RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 TBC1D13Q9NVG8 400 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 PSD3Q9NYI0 1048 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 FNIP2Q9P278 1114 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 UXTQ9UBK9 157 aaPredicted RBP8.72□□□□□ -1.01
USP54-203ENST00000418501 HEY1Q9Y5J3 304 aa8.72□□□□□ -1.01
USP54-203ENST00000418501 SYNJ2BP-COX16A0A087WUM0 186 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 ENPP3O14638 875 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 PTGIRP43119 386 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 RPL34P49207 117 aaKnown RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 SLC25A11Q02978 314 aaKnown RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 PLEKHG4Q58EX7 1191 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 LHX8Q68G74 356 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 CLEC20AQ6ZU45 233 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 ZNF598Q86UK7 904 aaKnown RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 OSTM1Q86WC4 334 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 OLIG1Q8TAK6 271 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 PCED1BQ96HM7 432 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 SNRNP25Q9BV90 132 aaKnown RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 DPEP3Q9H4B8 488 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 PLEKHA4Q9H4M7 779 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 KLHL11Q9NVR0 708 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 ABI2Q9NYB9 513 aaPredicted RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 COX16Q9P0S2 106 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 TCRBV5S1A1TA0A578 114 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 URODP06132 367 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 CFHP08603 1231 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 RAG1P15918 1043 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 LMO2P25791 158 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 ARPP19P56211 112 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 IRX5P78411 483 aaPredicted RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 DPYSL2Q16555 572 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 TIGD7Q6NT04 549 aaPredicted RBP8.71□□□□□ -1.01
USP54-203ENST00000418501 TMC3Q7Z5M5 1100 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 ITIH5Q86UX2 942 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 FAM126BQ8IXS8 530 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 CCNYQ8ND76 341 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 HDAC7Q8WUI4 952 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 NAT9Q9BTE0 207 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 TTPALQ9BTX7 342 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 TXNDC16Q9P2K2 825 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 NEU2Q9Y3R4 380 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 PCDHB12Q9Y5F1 795 aa8.71□□□□□ -1.01
USP54-203ENST00000418501 EVPLQ92817 2033 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 WDR81Q562E7 1941 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 PIK3R2O00459 728 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 OAZ2O95190 189 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 CLTBP09497 229 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 KRT10P13645 584 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 BDNFP23560 247 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 YWHAQP27348 245 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 HSD17B3P37058 310 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 ALDH1A3P47895 512 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 KCNJ1P48048 391 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 PPP3CCP48454 512 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 NOMO1Q15155 1222 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 SLC39A12Q504Y0 691 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 SLC39A5Q6ZMH5 540 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 UNC45BQ8IWX7 931 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 ZCCHC9Q8N567 271 aaKnown RBP8.71□□□□□ -1.02
USP54-203ENST00000418501 LRRC39Q96DD0 335 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 SERPINB12Q96P63 405 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 PCDH18Q9HCL0 1135 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 SAYSD1Q9NPB0 183 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 TRHDEQ9UKU6 1024 aa8.71□□□□□ -1.02
USP54-203ENST00000418501 TIMM13Q9Y5L4 95 aaPredicted RBP8.71□□□□□ -1.02
USP54-203ENST00000418501 SPTLC1O15269 473 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 KCNN4O15554 427 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 CREB3O43889 395 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 FGFR1P11362 822 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 STX2P32856 288 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 FLT3P36888 993 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 BRCC3P46736 316 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 CDK7P50613 346 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 HIC1Q14526 733 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 C1orf228Q6PIY5 440 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 SPATS2Q86XZ4 545 aaKnown RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 SREK1Q8WXA9 508 aaKnown RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 RAPGEF5Q92565 580 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 FBXO32Q969P5 355 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 RETREG1Q9H6L5 497 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 SAMD15Q9P1V8 674 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 BCLAF3A2AJT9 711 aaKnown RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 OPHN1O60890 802 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 BAIAP3O94812 1187 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 CPP00450 1065 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 ABHD2P08910 425 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 NUDT17P0C025 328 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 RPL21P46778 160 aaKnown RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 ATN1P54259 1190 aaPredicted RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 YWHAGP61981 247 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP54-203ENST00000418501 TRIP13Q15645 432 aaPredicted RBP8.7□□□□□ -1.02
USP54-203ENST00000418501 MGAT5BQ3V5L5 792 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 KCNT1Q5JUK3 1230 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 TMCO4Q5TGY1 634 aa8.7□□□□□ -1.02
USP54-203ENST00000418501 ANKRD33Q7Z3H0 272 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms