RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 AVPR1AP37288 418 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ALDH1A3P47895 512 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CPA2P48052 419 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 SKOR1P84550 965 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 MAPRE1Q15691 268 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 SLC10A6Q3KNW5 377 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 DUPD1Q68J44 220 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 B3GALNT2Q8NCR0 500 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 BLOC1S5Q8TDH9 187 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 APBA2Q99767 749 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TSSK1BQ9BXA7 367 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ELOVL4Q9GZR5 314 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 SLC40A1Q9NP59 571 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 IPPQ9Y573 584 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ITGB4P16144 1822 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 SDK1Q7Z5N4 2213 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 E5RI56 91 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 GLRBP48167 497 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 MAP3K21Q5TCX8 1036 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CAPRIN2Q6IMN6 1127 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ELMOD1Q8N336 334 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 DDX27Q96GQ7 796 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TUBB6Q9BUF5 446 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 SNRNP25Q9BV90 132 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TRIM62Q9BVG3 475 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 COLEC11Q9BWP8 271 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ST6GALNAC4Q9H4F1 302 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TASP1Q9H6P5 420 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 GON4LQ3T8J9 2241 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CFAP73A6NFT4 308 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ENO4A6NNW6 628 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ALDH1A1P00352 501 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ERBB2P04626 1255 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CKMP06732 381 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 STX1BP61266 288 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 MRPS6P82932 125 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 NOL9Q5SY16 702 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 MREGQ8N565 214 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 USP6NLQ92738 828 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 TMEM106CQ9BVX2 250 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 CATSPERBQ9H7T0 1116 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 FAM105AQ9NUU6 356 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 NINJ2Q9NZG7 142 aa11.56□□□□□ -0.56
PTPRF-204ENST00000412568 KIAA0100Q14667 2235 aaKnown RBP11.56□□□□□ -0.56
PTPRF-204ENST00000412568 ZMYM2Q9UBW7 1377 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 AGPSO00116 658 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 DNALI1O14645 258 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 TSPAN1O60635 241 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 ATP5HO75947 161 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 S100BP04271 92 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 OR4Q2P0C623 313 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 MBTD1Q05BQ5 628 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 BIRC2Q13490 618 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 TSHZ1Q6ZSZ6 1077 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 PPWD1Q96BP3 646 aaKnown RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 TKTL2Q9H0I9 626 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 NEUROG2Q9H2A3 272 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 PCDH9Q9HC56 1237 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 NDFIP2Q9NV92 336 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 HACD3Q9P035 362 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 MOSPD1Q9UJG1 213 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 RPTORQ8N122 1335 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 LOC100653049A0A140TA62 436 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 FOXO6A8MYZ6 492 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 O00370 1275 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 DPYSL4O14531 572 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 MSCO60682 206 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 KRT34O76011 436 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 VNN1O95497 513 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 ASGR1P07306 291 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 NOVP48745 357 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 HARS2P49590 506 aaKnown RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 CSE1LP55060 971 aaKnown RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 ART3Q13508 389 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 POU6F1Q14863 301 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 MORF4L2Q15014 288 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 ARID3BQ8IVW6 561 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 KATNAL2Q8IYT4 538 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 EIF1ADQ8N9N8 165 aaKnown RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 ELMO2Q96JJ3 720 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 TMEM51Q9NW97 253 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 HMGXB4Q9UGU5 601 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 SUFUQ9UMX1 484 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 SLC27A5Q9Y2P5 690 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 B4GALT4O60513 344 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 LTFP02788 710 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 WEE1P30291 646 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 KIF19Q2TAC6 998 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 LRRC23Q53EV4 343 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 TTC30AQ86WT1 665 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 LRRC43Q8N309 656 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 MAGEB5Q9BZ81 275 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 NOCTQ9UK39 431 aaKnown RBP11.55□□□□□ -0.56
PTPRF-204ENST00000412568 C2CD2Q9Y426 696 aa11.55□□□□□ -0.56
PTPRF-204ENST00000412568 DDX3YO15523 660 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 C22orf31O95567 290 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 ATP4AP20648 1035 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 SOX11P35716 441 aa11.54□□□□□ -0.56
PTPRF-204ENST00000412568 KPNA2P52292 529 aaKnown RBP11.54□□□□□ -0.56
PTPRF-204ENST00000412568 INHBEP58166 350 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms